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CRD Technical Reports

2008

LBNL-1012E. Daniela Mayumi Ushizima (2008). Pattern Recognition on Biomedical Datasets. Annual Meeting of the Society for Industrial and Applied Mathematics, Conference on Imaging Science, San Diego, California.

LBNL-960E. Daniela M. Ushizima, Oliver Rubel, Mr. Prabhat, Gunther H. Weber, E. Wes Bethel, Cecilia R. Aragon, Cameron G.R. Geddes, Estelle Cormier-Michel, Bernd Hamann, Peter Messmer, Hans Hagen (2008). Automated analysis for detecting beams in laser wakefield simulations. The 2008 International Conference on Machine Learning and Applications (ICMLA'08), San Diego, California.

LBNL-959E. Lin-Wang Wang, Byounghak Lee, Hongzhang Shan, Zhengji Zhao, Juan Meza, Erich Strohmaier, David H. Bailey (2008). Linearly Scaling 3D Fragment Method for Large-Scale Electronic Structure Calculations. Proceedings of SC08, Austin, TX.

LBNL-958E. Regis C.P. Marques, Fatima N.S. Medeiros, Daniela M. Ushizima (2008). Target Detection in SAR Images Based on a Level Set Approach. IEEE Transactions on Systems, Man and Cybernetics.

LBNL-952E. Oliver Rubel, Prabhat, Kesheng Wu, Hank Childs, Jeremy Meredith, Cameron G.R. Geddes, Estelle Cormier-Michel, Sean Ahern, Gunther H. Weber, Peter Messmer, Hans Hagen, Bernd Hamann, E. Wes Bethel (2008). Application of High-Performance Visual Analysis Methods to Laser Wakefield Particle Acceleration Data. IEEE Visualization 2008, Columbus, Ohio.

LBNL-929E. D.O. Demchenko, G.M. Sacha, M. Salmeron, L.-W. Wang (2008). Interactions of Oxygen and Hydrogen on Pd(111) surface. Surface Science.

LBNL-912E. Haim Avron, Esmond G. Ng, Sivan Toledo (2008). Using Perturbed QR Factorizations to Solve Linear Least-Squares Problems. SIAM Journal on Matrix Analysis and Applications.

LBNL-905E. Panagiotis Spentzouris, John Cary, Lois Curfman McInnes, Warren Mori, Cho Ng, Esmond Ng, Robert Ryne (2008). Community petascale project for accelerator science and simulation: Advancing computational science for future accelerators and accelerator technologies. Journal of Physics: Conference Series, SciDAC 2008, Seattle, WA.

LBNL-904E. Arie Shoshani, Elaheh Pourabbas (2008). Improving Estimation Accuracy of Aggregate Queries on Data Cubes. ACM Eleventh International Workshop on Data Warehousing and OLAP (DOLAP), Napa Valley, CA.

LBNL-877E. Denis O. Demchenko, Richard D. Robinson, Bryce Sadtler, Can K. Erdonmez, A. Paul Alivisatos, Lin-Wang Wang (2008). Formation mechanism and properties of CdS-Ag2S nanorod superlattices. ACS Nano 2, 627.

LBNL-875E. Byounghak Lee, Andrew Canning, Lin-Wang Wang (2008). Effects of d-electrons in pseudopotential screened-exchange density functional calculations. Journal of Applied Physics 103, 113713.

LBNL-874E. Julianne Chung, Philip Sternberg, Chao Yang (2008). High Performance 3-D Image Reconstruction for Molecular Structure Determination. International Journal of High Performance Computing Applications.

LBNL-845E. Samuel Williams, Kaushik Datta, Jonathan Carter, Leonid Oliker, John Shalf, Katherine Yelick, David H Bailey (2008). PERI — Auto-Tuning Memory Intensive Kernels for Multicore. SciDAC 2008 Conference, Seattle, WA.

LBNL-843E. William Johnston, Joe Metzger, Michael Collins, Joseph Burrescia, Eli Dart, Jim Gagliardi, Chin Guok, Kevin Oberman, Mike O'Conner (2008). Network Communication as a Service-Oriented Capability. In High Performance Computing and Grids in Action: Advances in Parallel Computing, ed. L. Grandinetti, IOS Press.

LBNL-820E. Joshua Schrier, Lin-Wang Wang (2008). Shape dependence of resonant energy transfer between semiconductor nanocrystals. Journal of Physical Chemistry.

LBNL-818E. Qingzhong Zhao, Peter A. Graf, Wesley B. Jones, Alberto Franceschetti, Jingbo Li, Lin-Wang Wang, Kwiseon Kim (2008). Shape dependence of band-edge exciton fine structure in CdSe nanocrystals. Nano Letters 7, 3274.

LBNL-816E. Lin-Wang Wang (2008). How to rank the TOP500 list?

LBNL-803E. Luke J. Gosink, John C. Anderson, E. Wes Bethel, Kenneth I. Joy (2008). Query-Driven Visualization of Time-Varying Adaptive Mesh Refinement Data. IEEE Transactions on Visualization and Computer Graphics.

LBNL-753E. Stephen E Derenzo, Martin S. Boswell, Edith Bourret-Courchesne, Rostyslav Boutchko, Thomas F. Budinger, Andrew Canning, Stephen M. Hanrahan, Martin Janecek, Qiyu Peng, Yetta Porter-Chapman, James Powell, Christopher A. Ramsey, Scott E. Taylor, Lin-Wang Wang, Marvin J. Weber, David S. Wilson (2008). Design and Implementation of a Facility for Discovering New Scintillator Materials. IEEE Transactions on Nuclear Science 55, 1485-1463.

LBNL-733E. Yong Zhang, Angelo Mascarenhas, Lin-Wang Wang (2008). Non-Bloch nature of alloy states in a conventional semiconductor alloy — GaxIn1-xP as an example. Physics Review Letters.

LBNL-732E. Jianwei Sun, Lin-Wang Wang, William E. Buhro (2008). Synthesis of cadmium telluride quantum wires and the similarity of their band gaps to those of equidiameter cadmium telluride quantum dots. Journal of the American Chemical Society 130, 7997.

LBNL-731E. Fudong Wang, Heng Yu, Jingbo Li, Qingling Hang, Dmitry Zemlyanov, Patrick C. Gibbons, Lin-Wang Wang, David B. Janes, William E. Buhro (2008). Spectroscopic properties of colloidal indium phosphide quantum wires. Journal of American Chemical Society 129, 14327.

LBNL-729E. Luke J. Gosink, Kesheng Wu, Edward Wes Bethel, John D. Owens, Kenneth I. Joy (2008). Bin-Hash Indexing: A Parallel Method for Fast Query Processing. Proceedings of International Conference on Data Engineering.

LBNL-725E. Joseph F Grcar (2008). A New Type of Steady and Stable, Laminar, Premixed Flame in Ultra-Lean, Hydrogen-Air Combustion. Proceedings of the Combustion Institute.

LBNL-724E. Zhengji Zhao, Juan Meza, Lin-Wang Wang (2008). A divide-and-conquer linear scaling three dimensional fragment method for large scale electronic structure calculations. Journal of Physics: Condensed Matter 20, 294203.

LBNL-723E. Xiang-Wei Jiang, Hui-Xiong Deng, Jun-Wei Luo, Shu-Shen Li, Lin-Wang Wang, Jian-Bai Xia (2008). A fully 3D atomistic quantum mechanical study on random dopant induced effects in 25nm MOSFETs. IEEE Transactions on Electron Devices 55, 1720.

LBNL-722E. Hui-Xiong Deng, Xiang-Wei Jiang, Jun-Wei Luo, Shu-Shen Li, Jian-Bai Xia, Lin-Wang Wang (2008). Multiple Valley Couplings in Nanometer Si MOSFETs. Journal of Applied Physics 103, 124507.

LBNL-721E. Allen L. Kuhl, Laurence E. Fried, W. Michael Howard, Michael R. Seizew, John B. Bell, Vincent Beckner, Joseph F. Grcar (2008). Detonation of Meta-Stable Clusters. Fraunhofer Institute for Chemical Technology (ICT) 39th Annual Conference on Energetic Materials, Karlsruhe, Germany.

LBNL-720E. Forman A Williams, Joseph F Grcar (2008). A Hypothetical Burning-Velocity Formula for Very Lean Hydrogen-Air Mixtures. Proceedings of the Combustion Institute.

LBNL-697E. Ekow J. Otoo, Doron Rotem, Sridhar Seshadri (2008). Optimal Chunking of Large Multidimensional Arrays for Data Warehousing. Information Systems.

LBNL-669E. Joseph F. Grcar, John B. Bell, Marcus S. Day (2008). The Soret Effect in Naturally Propagating, Premixed, Lean, Hydrogen-Air Flames. Proceedings of the Combustion Institute.

LBNL-663E. Brian L Tierney, Dan Gunter (2008). Grid Logging: Best Practices Guide.

LBNL-659E. R.S. Ellis, M. Sullivan, P.E. Nugent, D.A. Howell, A. Gal-Yam, P. Astier, D. Balam, C. Balland, S. Basa, R. Carlberg, A. Conley, D. Fouchez, J. Guy, D. Hardin, I. Hook, R. Pain, K. Perrett, C.J. Pritchet, N. Regnault (2008). Verifying the Cosmological Utility of Type Ia Supernovae: Implications of a Dispersion in the Ultraviolet Spectra. Astrophysical Journal 674, 51.

LBNL-658E. Cecilia R. Aragon, Sarah S. Poon, Gregory S. Aldering, Rollin C. Thomas, Robert Quimby (2008). Using Visual Analytics to Maintain Situation Awareness in Astrophysics. Proceedings of the IEEE Symposium on Visual Analytics Science and Technology, Columbus, Ohio.

LBNL-644E. Eli Dart, Brian Tierney (2008). FES Science Network Requirements — Report of the Fusion Energy Sciences Network Requirements Workshop Conducted March 13 and 14, 2008.

LBNL-637E. Ekow J. Otoo, Doron Rotem, Ali Pinar, Shi-Chiang Tsao (2008). A File Allocation Strategy for Energy-Efficient Disk Storage Systems.

LBNL-633E. Josh Bloom, Dan Starr, Nat Butler, Peter Nugent, M. Rischard, D. Eads, Dovi Poznanski (2008). Towards a Real-Time Transient Classification Engine. Astronomische Nachrichten 329, 284-87.

LBNL-632E. G. Garavini, G. Folatelli, S. Nobili, G. Aldering, R. Amanullah, P. Antilogus, P. Astier, G. Blanc, J. Bronder, M.S. Burns, A. Conley, S. E. Deustua, M. Doi, S. Fabbro, V. Fadeyev, R. Gibbons, G. Goldhaber, A. Goobar, D. E. Groom, I. Hook, D. A. Howell, N. Kashikawa, A. G. Kim, M. Kowalski, N. Kuznetsova, B. C. Lee, C. Lidman, J. Mendez, T. Morokuma, K. Motohara, P. E. Nugent, R. Pain, S. Perlmutter, R. Quimby, J. Raux, N. Regnault, P. Ruiz-Lapuente, G. Sainton, K. Schahmaneche, E. Smith, A. L. Spadafora, V. Stanishev, R. C. Thomas, N. A. Walton, L. Wang, W. M. Wood-Vasey, N. Yasuda (2008). Quantitative comparison between Type Ia supernova spectra at low and high redshifts: A case study. Astronomy and Astrophysics 470, 411.

LBNL-603E. Lin-Wang Wang, Byounghak Lee, HongZhang Shan, Zhengji Zhao, Juan Meza, Erich Strohmaier, David Bailey (2008). Linear scaling 3D fragment method for large-scale electronic structure calculations. Supercomputing 2008.

LBNL-591E. Philip Sternberg, Pieter Maris, Esmond Ng, Masha Sosonkina, Hung Viet Le, James Vary, Chao Yang (2008). Accelerating Full Configuration Interaction Calculations for Nuclear Structure. Supercomputing 2008, Austin, TX.

LBNL-587E. Ali Pinar, Ertugrul Kartal Tabak, Cevdet Aykanat (2008). One-Dimensional Partitioning for Heterogeneous Systems: Theory and Practice. Journal of Parallel and Distributed Computing.

LBNL-571E. Xiaoye Sherry Li (2008). Evaluation of Sparse LU Factorization and Triangular Solution on Multicore Platforms. VECPAR'08, 8th International Meeting on High Performance Computing for Computational Science, Toulouse, France.

LBNL-562E. Victor M. Markowitz, Daniel Dalevi, Natalia N. Ivanova, Konstantinos Mavromatis, Sean Hooper, Ernest Szeto, Phillip Hugenholtz, Nikos C. Kyrpides (2008). Annotation of metagenome short reads using proxygenes.

LBNL-548E. David H. Bailey (2008). Resolving Numerical Anomalies in Scientific Computation.

LBNL-547E. David H. Bailey, Jonathan M. Borwein (2008). High-Precision Numerical Integration: Progress and Challenges. Journal of Symbolic Computation.

LBNL-472E. E. Wes Bethel, Chris Johnson, Charles Hansen, Claudio Silva, Steven Parker, Allen Sanderson, Xavier Tricoche, Martin Cole, Sean Ahern, George Ostrouchov, Dave Pugmire, Jeremy Meredith, Valerio Pascucci, Hank Childs, Peer-Timo Bremer, Daniel Laney, Ajith Mascarenhas, Kathleen Bonnell, Ken Joy, Bernd Hamann, Cecilia Aragon, Gunther Weber, Prabhat (2008). Seeing the Unseeable. SciDAC Review Number 8, Jun-08.

LBNL-392E. Chin Guok, Jason R. Lee, Karlo Berket (2008). Improving the bulk data transfer experience. International Journal of Internet Protocol Technology.

LBNL-359E. Evan Mills, William Tschudi, John Shalf, Horst Simon (2008). Supercomputers: Super-Polluters? Data Centers Journal.

LBNL-314E. George Shu Heng Pau (2008). Reduced Basis Method for Nanodevices Simulation. Physical Review B.

LBNL-302E. Andrew J. Aspden, John B. Bell, Marc S. Day, Stan E. Woosley, Mike Zingale (2008). Turbulence-Flame Interactions in Type Ia Supernovae. Astrophysical Journal.

LBNL-249E. Oliver Rubel, Gunther H. Weber, Min-Yu Huang, E. Wes Bethel, Soile V.E. Keranen, Charless C. Fowlkes, Cris L. Luengo Hendriks, Angela H. DePace, L. Simirenko, Michael B. Eisen, Mark D. Biggin, Hand Hagen, Jitendra Malik, David W. Knowles, Bernd Hamann (2008). PointCloudExplore 2: Visual exploration of 3D gene expression.

LBNL-196E. Pietro Cicotti, Xiaoye Sherry Li, Scott B. Baden (2008). LUsim: A Framework for Simulation-Based Performance Modeling and Prediction of Parallel Sparse LU Factorization. SC2008, Austin, TX.

LBNL-173E. Kesheng Wu, Kurt Stockinger, Arie Shoshani (2008). Breaking the Curse of Cardinality on Bitmap Indexes. 20th International Conference on Scientific and Statistical Database Management (SSDBM), Hong Kong, China.

LBNL-102E Nenad Vukmirovic, Lin-Wang Wang (2008). Charge patching method for electronic structure of organic systems. Journal of Chemical Physics.


2007

LBNL-906E. J.R. Cary, P. Spentzouris, J. Amundson, L. McInnes, M. Borland, B. Mustapha, P. Ostroumov, Y. Wang, W. Fischer, A. Fedotov, I. Ben-Zvi, R. Ryne, E. Esarey, C. Geddes, J. Qiang, E. Ng, S. Li, C. Ng, R. Lee, L. Merminga, H. Wang, D.L. Bruhwiler, D. Dechow, P. Mullowney, P. Messmer, C. Nieter, S. Ovtchinnikov, K. Paul, P. Stoltz, D. Wade-Stein, W.B. Mori, V. Decyk, C.K. Huang, W. Lu, M. Tzoufras, F. Tsung, M. Zhou, G.R. Werner, T. Antonsen, T. Katsouleas, B. Morris (2007). COMPASS, the COMmunity Petascale Project for Accelerator Science and Simulation, a board computational accelerator physics initiative. Journal of Physics: Conference Series 78, 12009 (SciDAC 2007, Boston, MA).

LBNL-778E. Keith Beattie, Christopher Day, Dave Glowacki, Kael Hanson, John Jacobsen, Charles McParland, Simon Patton (2007). The IceCube Data Acquisition Software: Lessons Learned during Distributed, Collaborative, Multi-Disciplined Software Development. Journal of Physics: Conference Series, CHEP 2007, Victoria, British Columbia, Canada.

LBNL-754E. Byounghak Lee, Andrew Canning, Lin-Wang Wang (2007). Effects of d-electrons in pseudopotential screened-exchange density functional calculations. Journal of Applied Physics.

LBNL-696E. Stephen Bailey, Cecilia R. Aragon, Raquel Romano, Rollin C. Thomas, B. A. Weaver, D. Wong (2007). Object Classification at the Nearby Supernova Factory. Astronomische Nachrichten 329, 292-294.

LBNL-657E. Cecilia R. Aragon, Stephen J. Bailey, Sarah Poon, Karl J. Runge, Rollin C. Thomas (2007). Sunfall: A Collaborative Visual Analytics System for Astrophysics (Poster). Proceedings of the 2007 IEEE Symposium on Visual Analytics Science and Technology, Sacramento, CA.

LBNL-613E. E.Y. Hsiao, A. Conley, D.A. Howell, M. Sullivan, C.J. Pritchet, R.G. Carlberg, P.E. Nugent, M.M. Phillips (2007). K-corrections and spectral templates of Type Ia supernovae. The Astrophysical Journal 663, 1187.

LBNL-570E. David H. Bailey (2007). On a Tan Product Conjecture.

LBNL-568E. David H Bailey (2007). A Non-Normality Result.

LBNL-220E. Gunther H. Weber, Vince E. Beckner, Hank Childs, Terry J. Ligocki, Mark C. Miller, Brian Van Straalen, E. Wes Bethel (2007). Visualization of Scalar Adaptive Mesh Refinement Data. 2nd International Conference on Numerical Modeling of Space Plasma Flows.

LBNL-63763. Gunther H. Weber, Peer-Timo Bremer, Valerio Pascucci (2007). Topological Landscapes: A Terrain Metaphor for Scientific Data. IEEE Transactions on Visualization and Computer Graphics 13, 1416-1423.

LBNL-63730. David H. Bailey, Robert Lucas, Paul Hovland, Boyana Norris, Kathy Yelick, Dan Gunter, Bronis de Supinski, Dan Quinlan, Pat Worley, Jeff Vetter, Phil Roth, John Mellor-Crummey, Allan Snavely, Jeff Hollingsworth, Dan Reed, Rob Fowler, Ying Zhang, Mary Hall, Jacque Chame, Jack Dongarra, Shirley Moore (2007). Performance Engineering: Understanding and Improving the Performance of Large-Scale Codes. CT Watch Quarterly 3(4), 18-23 (11/1/2007).

LBNL-63718. Natalie J. Durgin, Sofia M. Garcia, Tamara Flournoy, David H. Bailey (2007). “Syncing” Up with the Quinn-Rand-Strogatz Constant: Hurwitz-Zeta Functions in Non-Linear Physics.

LBNL-63701. E. Wes Bethel, Chris Johnson, Cecilia Aragon, Prabhat, Oliver Rubel, Gunther Weber, Valerio Pascucci, Hank Childs, Peer-Timo Bremer, Brad Whitlock, Sean Ahern, Jeremey Meredith, George Ostrouchov, Ken Joy, Bernd Hamann, Christoph Garth, Martin Cole, Charles Hansen, Steven Parker, Allen Sanderson, Claudio Silva, Xavier Tricoche (2007). DOE’s SciDAC Visualization and Analytics Center for Enabling Technologies — Strategy for Petascale Visual Data Analysis Success.

LBNL-63675. E. Wes Bethel, Ilmi Yoon, Jerry Chen (2007). Interactive, Internet Delivery of Visualization via Structured, Prerendered Multiresolution Imagery.

LBNL-63674. E. Wes Bethel, Luke J. Gosink, John C. Anderson, Kenneth I. Joy (2007). Variable Interactions in Query-Driven Visualization.

LBNL-63658. E. Wes Bethel, Oliver Rubel, Gunther H. Weber, Bernd Hamann, Hans Hagen (2007). Visualization and Analysis of 3D Gene Expression Data.

LBNL-63657. Gunther H. Weber, Hank Childs, Kathleen Bonnell, Jeremy Meredith, Mark Miller, Brad Whitlock, E. Wes Bethel (2007). Production-Quality Tools for Adaptive Mesh Refinement Visualization.

LBNL-63615. Victor M. Markowitz, Natalia Ivanova, Iain Anderson, Athanasios Lykidis, Konstantinos Mavromatis, Ernest Szeto, Krishna Palaniappan, I-Min A. Chen, Ken Chu, Yuri Grechkin, Nikos C. Kyrpides (2007). Microbial Genome Annotation and Analysis Tutorial.

LBNL-63614. Victor M. Markowitz, Natalia Ivanova, Iain Anderson, Athanasios Lykidis, Konstantinos Mavromatis, Ernest Szeto, Krishna Palaniappan, I-Min A. Chen, Ken Chu, Yuri Grechkin, Nikos C. Kyrpides (2007) Using IMG: Comparative Analysis with the Integrated Microbial Genomes System.

LBNL-63601. John McCarthy, Bruce Bargmeyer (2007). Ecoinformatics Project: Semantics Management and Semantics Services.

LBNL-63542. E. Wes Bethel, Chris Johnson, Ken Joy, Sean Ahern, Valerio Pascucci, Hank Childs, Jonathan Cohen, Mark Duchaineau, Bernd Hamann, Charles Hansen, Dan Laney, Peter Lindstrom, Jermey Meredith, George Ostrouchov, Steven Parker, Claudio Silva, Allen Sanderson, Xavier Tricoche (2007). SciDAC Visualization and Analytics Center for Enabling Technologies. Journal of Physics: Conference Series (SciDAC 2007) 78, 012032(1-5).

LBNL-63523. Juan C. Meza, Arantzazu Garcia-Lekue, Mark A. Abramson, John E. Dennis (2007). Derivative-free optimization methods for surface structure determination of nanosystems. 6th International Congress on Industrial and Applied Mathematics, Zurich, Switzerland.

LBNL-63487. Patrick Cesarz, Gina-Maria Pomann, Luis de la Torre, Greta Villarosa, Tamara Flournoy, Ali Pinar, Juan Meza (2007). Detecting Network Vulnerabilities through Graph Theoretical Methods.

LBNL-63279. Vern Paxson, Robin Sommer, Nicholas Weaver (2007). An Architecture for Exploiting Multi-Core Processors to Parallelize Network Intrusion Prevention. Proceedings of the IEEE Sarnoff Symposium 2007, Princeton, NJ.

LBNL-63278. Matthias Vallentin, Robin Sommer, Jason Lee, Craig Leres, Vern Paxson, Brian Tierney (2007). The NIDS Cluster: Scalable, Stateful Network Intrusion Detection on Commodity Hardware. Proceedings of the Symposium on Recent Advances in Intrusion Detection, Queensland, Australia.

LBNL-63254. Luke J. Gosink, John C. Anderson, E. Wes Bethel, Kenneth I. Joy (2007). Variable Interactions in Query-Driven Visualization. Transactions on Visualization and Computer Graphics 13, 1400-1407.

LBNL-62898. Shiv Chandrasekaran, Ming Gu, Xiaoye S. Li, Jianlin Xia (2007). Superfast multifrontal method for structured linear systems of equations.

LBNL-62897. Shiv Chandrasekaran, Ming Gu, Xiaoye S. Li, Jianlin Xia (2007). Some fast algorithms for hierarchically semiseparable matrices.

LBNL-62756. Elizabeth O'Neil, Patrick O'Neil, Kesheng Wu (2007). Bitmap Index Design Choices and Their Performance Implications. IDEAS '07: Eleventh International Database Engineering & Applications Symposium, Banff, Canada.

LBNL-62662. Jonathan Carter, Yun He, John Shalf, Hongzhang Shan, Erich Strohmaier, Harvey Wasserman (2007). The Performance Effect of Multi-core on Scientific Applications. Cray User Group Meeting 2007, Seattle, WA.

LBNL-62637. David H. Bailey, Jonathan M. Borwein, Neil J. Calkin, Roland Girgensohn, D. Russell Luke, Victor H. Holl (2007). Experimental Mathematics in Action. AK Peters, Ltd.

LBNL-62505. J.F. Grcar, M.S. Day, J.B. Bell (2007). Diagnostics for the Combustion Science Workbench. Proceedings of the 5th U.S. National Combustion Meeting, San Diego, California.

LBNL-62500. John Levesque, Jeff Larkin, Martyn Foster, Joe Glenski, Garry Geissler, Stephen Whalen, Brian Waldecker, Jonathan Carter, David Skinner, Helen He, Harvey Wasserman, John Shalf, Hongzhang Shan, Erich Strohmaier (2007). Understanding and Mitigating Multicore Performance Issues on the AMD Opteron Architecture.

LBNL-62025. D.F. Martin, P. Colella, D.T. Graves (2007). A Cell-Centered Adaptive Projection Method for the Incompressible Navier-Stokes Equations in Three Dimensions. Journal of Computational Physics 227, 1863-86.

LBNL-61337. Byounghak Lee, Lin-Wang Wang, Catalin D. Spataru, Steven G. Louie (2007). Nonlocal exchange correlation in screened-exchange density functional methods. Physical Review B 76, 245114-245121.

LBNL-60891. Kesheng Wu, Kurt Stockinger, Arie Shoshani (2007). Performances of Multi-Level and Multi-Component Compressed Bitmap Indices.

LBNL/PUB-3192. Kesheng Wu (2007). FastBit Reference Manual.


2006

LBNL-63285. V. Paxson, K. Asanovic, S. Dharmapurikar, J. Lockwood, R. Pang, R. Sommer, N. Weaver (2006). Rethinking Hardware Support for Network Analysis and Intrusion Prevention.

LBNL-63284. J. Kannan, J. Jung, V. Paxson, C. Koksal (2006). Semi-Automated Discovery of Application Session Structure, IMC'06, Rio de Janeiro, Brazil.

LBNL-63283. Ruoming Pang, Vern Paxson, Robin Sommer, Larry Peterson (2006). binpac: A yacc for Writing Application Protocol Parsers. In Proceedings of the ACM SIGCOMM Internet Measurement Conference, Rio de Janeiro, Brazil.

LBNL-62391. Aran Garcia-Lekue, Lin-Wang Wang (2006). Elastic quantum transport calculations for molecular nanodevices using plane waves. Physical Review B 74, 245404.

LBNL-62336. Oliver Rubel, Gunther H. Weber, Soile V.E. Keranen, Charles C. Fowlkes, Cristian L. Luengo Hendriks, Lisa Simirenko, Nameeta Y. Shah, Michael B. Eisen, Mark D. Biggn, Hans Hagen, Damir J. Sudar, Jitendra Malik, David W. Knowles, Bernd Hamann (2006). PointCloudXplore: A visualization tool for 3D gene expression data.

LBNL-62142. Ali Pinar, Yonatan Fogel, Bernard Lesieutre (2006). The Inhibiting Bisection Problem. 19th ACM Symposium on Parallelism in Algorithms and Architectures, San Diego, CA,

LBNL-61768. Arie Shoshani (2006). Using Bitmap Indexing Technology for Combined Numerical and Text Queries.

LBNL-61763. Ali Pinar, Adam Reichert, Bernard Lesieutre (2006). Computing Criticality of Lines in Power Systems. 2007 IEEE International Symposium on Circuits and Systems, New Orleans, LA.

LBNL-61691. Lin-Wang Wang, Zhengji Zhao, Juan Meza (2006). Linear Scaling 3D Fragment Method for Large-Scale Electronic Structure Calculations.

LBNL-61628. James Sethian (2006). Seismic velocity estimation and time to depth conversion of time-migrated images. SEG 2006, International Exposition & 76th Annual Meeting, New Orleans, LA.

LBNL-61600. Bernard C. Lesieutre, Sandip Roy, Vaibhav Donde, Ali Pinar (2006). Power system extreme event screening using graph partitioning. North American Power Symposium, Carbondale, IL.

LBNL-61573. W.C. Jones, P.A.R. Ade, J.J. Bock, J.R. Bond, J. Borrill, A. Boscaleri, P. Cabella, C.R. Contaldi, B.P. Crill, P. de Bernardis, G. De Gasperis, A. de Oliveira-Costa, G. De Troia, G. Di Stefano, E. Hivon, A.H. Jaffe, T.S. Kisner, A.E. Lange, C.J. MacTavish, S. Masi, P.D. Mauskopf, A. Melchiorri, T.E. Montroy, P. Natoli, C.B. Netterfield, E. Pascale, F. Piacentini, D. Pogosyan, G. Polenta, S. Prunet, S. Ricciardi, G. Romeo, J.E. Ruhl, P. Santini, M. Tegmark, M. Veneziani, N. Vittorio (2006). A Measurement of the CMB (EE) Spectrum from the 2003 Flight of BOOMERANG. Astrophysical Journal 647, 813–822.

LBNL-61572. W.C. Jones, P.A.R. Ade, J.J. Bock, J.R. Bond, J. Borrill, A. Boscaleri, P. Cabella, C.R. Contaldi, B.P. Crill, P. de Bernardis, G. De Gasperis, A. de Oliveira-Costa, G. De Troia, G. Di Stefano, E. Hivon, A.H. Jaffe, T.S. Kisner, A.E. Lange, C.J. MacTavish, S. Masi, P.D. Mauskopf, A. Melchiorri, T.E. Montroy, P. Natoli, C.B. Netterfield, E. Pascale, F. Piacentini, D. Pogosyan, G. Polenta, S. Prunet, S. Ricciardi, G. Romeo, J.E. Ruhl, P. Santini, M. Tegmark, M. Veneziani, N. Vittorio, E. Torbett, P. Ehlers, V. Hristov, A. Iacoangeli, C. Marini-Bettolo, P. Mason, F. Nati, L. Nati (2006). Instrument, Method, Brightness and Polarization Maps from the 2003 Flight of BOOMERANG. arXiv:astro-ph/0507509v1.

LBNL-61571. W.C. Jones, P.A.R. Ade, J.J. Bock, J.R. Bond, J. Borrill, A. Boscaleri, P. Cabella, C.R. Contaldi, B.P. Crill, P. de Bernardis, G. De Gasperis, A. de Oliveira-Costa, G. De Troia, G. Di Stefano, E. Hivon, A.H. Jaffe, T.S. Kisner, A.E. Lange, C.J. MacTavish, S. Masi, P.D. Mauskopf, A. Melchiorri, T.E. Montroy, P. Natoli, C.B. Netterfield, E. Pascale, F. Piacentini, D. Pogosyan, G. Polenta, S. Prunet, S. Ricciardi, G. Romeo, J.E. Ruhl, P. Santini, M. Tegmark, M. Veneziani, N. Vittorio, A.M. Lewis (2006). Cosmological Parameters from the 2003 Flight of BOOMERANG. Astrophysical Journal 647, 799–812.

LBNL-61570. W.C. Jones, P.A.R. Ade, J.J. Bock, J.R. Bond, J. Borrill, A. Boscaleri, P. Cabella, C.R. Contaldi, B.P. Crill, P. de Bernardis, G. De Gasperis, A. de Oliveira-Costa, G. De Troia, G. Di Stefano, E. Hivon, A.H. Jaffe, T.S. Kisner, A.E. Lange, C.J. MacTavish, S. Masi, P.D. Mauskopf, A. Melchiorri, T.E. Montroy, P. Natoli, C.B. Netterfield, E. Pascale, F. Piacentini, D. Pogosyan, G. Polenta, S. Prunet, S. Ricciardi, G. Romeo, J.E. Ruhl, P. Santini, M. Tegmark, M. Veneziani, N. Vittorio (2006). A Measurement of the Polarization-Temperature Angular Cross Power Spectrum of the Cosmic Microwave Background from the 2003 Flight of BOOMERANG. Astrophysical Journal 647, 833–839.

LBNL-61559. Lin-Wang Wang (2006). Towards bulk based preconditioning for quantum dot computations. IEEE/ACM HPCNano, SC05, Seattle, WA.

LBNL-61558. Lin-Wang Wang (2006). Performance evaluation of eigensolvers in nanostructure computations. IEEE/ACM HPCNano, SC05, Seattle, WA.

LBNL-61557. Tony Drummond (2006). Special Issue on Tools in the ACTS Collection. International Journal of High Performance Computing Applications 20, 161-622.

LBNL-61512. William E. Johnston (2006). The Advanced Networks and Services Underpinning Modern, Large-Scale Science: DOE's ESnet. In Grid Computing and New Frontiers of High Performance Processing, ed. L. Grandinetti, Elsevier.

LBNL-61192. Chris Ding (2006). Supernova Recognition using Support Vector Machines. International Conference on Machine Learning Applications, Orlando, FL.

LBNL-61114. E. Pourabbas and A. Shoshani (2006). Efficient Estimation of Joint Queries from Multiple OLAP Databases. ACM Transactions on Database Systems.

LBNL-61083. Kesheng Wu (2006). Enron Data Revisited - Neighborhood Queries with FastBit Win over Popular Commercial Database System.

LBNL-61051. Lin-Wang Wang (2006). A survey of codes and algorithms used in NERSC material science allocations.

LBNL-60918. H. Dreger, A. Feldmann, M. Mai, V. Paxson, and R. Sommer (2006). Dynamic application-layer protocol analysis for network intrusion detection. In USENIX Security Symposium, Vancouver, Canada.

LBNL-60903. E. Ng (2006). Parallel Sparse Solvers, Preconditioners, and Their Applications. In Parallel Processing for Scientific Computing, ed. Heroux, Raghavan, Simon. SIAM.

LBNL-60841. Zhengji Zhao, Lin-Wang Wang, Fengmin Wu (2006). Single particle wavefunction localizations in bulged CdSe nanowires. Journal of Computational and Theoretical Nanoscience 4, 247-251.

LBNL-60838. Joshua Schrier, Lin-Wang Wang (2006). Electronic structure of nanocrystal quantum-dot quantum wells. Physical Review B 73, 245332.

LBNL-60820. Byounghak Lee, Lin-Wang Wang (2006). Band gap bowing and electron localization of (GaxIn1-x)N. Journal of Applied Physics 100, 093717.

LBNL-60650. Pawel A. Penczek, Chao Yang, Joachim Frank, Christian M.T. Spahn (2006). Estimation of variance in single particle reconstruction using the bootstrap technique. Journal of Structural Biology 154, 168-183.

LBNL-60645. Z. Bai and C. Yang (2006). From Self-consistency to SOAR: Solving Large-scale Nonlinear Eigenvalue Problem. SIAM News (April).

LBNL-60596. Yun He, Chris H.Q. Ding (2006). Concurrent Single-Executable CCSM with MPH Library.

LBNL-60520. Paul H. Hargrove, Jason C. Duell (2006). Berkeley Lab Checkpoint/Restart (BLCR) for Linux Clusters. SciDAC 2006, Scientific Discovery Through Advanced Computing, Denver, CO. Journal of Physics: Conference Series 46, 494-99.

LBNL-60478 Poster. E. W. Bethel, C. Johnson, C. Hansen, S. Parker, A. Sanderson, C. Silva, X. Tricoche, V. Pascucci, H. Childs, J. Cohen, M. Duchaineau, D. Laney, P. Lindstrom, S. Ahern, J. Meredith, G. Ostrouchov, K. Joy, and B. Hamann (2006). Meet the Proposed Visualization and Analytics Center for Enabling Technologies. http://www-library.lbl.gov/docs/LBNL/604/78/PDF/LBNL-60478_Poster.pdf

LBNL-60413. E. W. Bethel, C. Johnson, C. Hansen, S. Parker, A. Sanderson, C. Silva, X. Tricoche, V. Pascucci, H. Childs, J. Cohen, M. Duchaineau, D. Laney, P. Lindstrom, S. Ahern, J. Meredith, G. Ostrouchov, K. Joy, and B. Hamann (2006). VACET: Proposed SciDAC2 Visualization and Analytics Center for Enabling Technologies. In SciDAC 2006 Conference, edited by unknown, Institute of Physics Publishing, Denver, CO, unknown.

LBNL-60384. L. Grigori and X. S. Li (2006). Towards an Accurate Performance Modeling of Parallel Sparse Factorization. Applicable Algebra in Engineering, Communication, and Computing.

LBNL-60373. Chin Guok, David Robertson, Mary Thompson, Jason Lee, Brian Tierney, William Johnston (2006). Intra and Interdomain Circuit Provisioning Using the OSCARS Reservation System. GridNets 2006, San Jose, California.

LBNL-60286. M. Sullivan, D. A. Howell, K. Perrett, P. E. Nugent, P. Astier, E. Aubourg, D. Balam, S. Basa, R. G. Carlberg, A. Conley, S. Fabbro, D. Fouchez, J. Guy, I. Hook, H. Lafoux, J. D. Neill, R. Pain, N. Palanque-Delabrouille, C. J. Pritchet, N. Regnault, J. Rich, R. Taillet, G. Aldering, S. Baumont, J. Bronder, M. Filiol, R. A. Knop, S. Perlmutter, and C. Tao (2006). Photometric Selection of High-Redshift Type Ia Supernova Candidates. The Astronomical Journal 131 (2), 960-972.

LBNL-60278. A.S. Fruchter, A.J. Levan, L. Strolger, P.M. Vreeswijk, S.E. Thorsett, D. Bersier, I. Burud, J.M. Castro Ceren, A.J. Castro-Tirado, C. Conselice, T. Dahlen, H.C. Ferguson, J.P.U. Fynbo, P.M. Garnavich, R.A. Gibbons, J. Gorosabel, T.R. Gull, J. Hjorth, S.T. Holland, C. Kouveliotou, Z. Levay, M. Livio, M.R. Metzger, P.E. Nugent, L. Petro, E. Pian, J.E. Rhoads, A.G. Riess, K.C. Sahu, A. Smette, N.R. Tanvir, R.A.M.J. Wijers, S.E. Woosley (2006). Long gamma-ray bursts and core-collapse supernovae have different environments. Nature 441, 463-68.

LBNL-60275. G. I. Barenblatt, M. Bertsch, and L. Giacomelli (2006). Stead and quasi-steady thin viscous flows near the edge of a solid surface. to be submitted for publication.

LBNL-60272. U. Adiga, R. Malladi, R. Gonzalez, and C. Ortiz de Solorzano (2006). A robust methodology for the analysis of multi-spectral images of breast cancer tissue blocks. to be submitted for publication.

LBNL-60147. C. Voemel, S. Tomov, L.-W. Wang, O. Marques, and J. Dongarra (2006). The use of bulk states to accelerate the band edge state calculation of a semiconductor quantum dot. Journal of Computational Physics.

LBNL-60060. Shoaib Kamil, Ali Pinar, Daniel Gunter, Michael Lijewski, Leonid Oliker, John Shalf, David Skinner (2006). Reconfigurable Hybrid Interconnection for Static and Dynamic Scientific Applications. SC06, International Conference for High Performance Computing, Networking, Storage and Analysis, Tampa, FL.

LBNL-60060. S. Kamil, A. Pinar, D. Gunter, M. Lijewski, L. Oliker, J. Shalf, and D. Skinner (2006). Reconfigurable Hybrid Interconnection for \\ Static and Dynamic Scientific Applications. In International Conference for High Performance Computing, Networking, Storage and Analysis, Tampa, FL. http://www-library.lbl.gov/docs/LBNL/600/60/PDF/LBNL-60060.pdf

LBNL-60053. Kesheng Wu (2006). Detecting Distributed Scans Using High-Performance Query-Driven Visualization. SC06, Tampa, Florida.

LBNL-60051. V. M. Markowitz, F. Korzeniewski, K. Palaniappan, E. Szeto, N. Ivanova, N. Kyrpides, and P. Hugenholtz (2006). An Experimental Metagenome Data Management and Analysis System. In ISMB 2006, Fortaleza, Brazil. http://www-library.lbl.gov/docs/LBNL/600/51/PDF/LBNL-60051.pdf

LBNL-59999. Kathy Yelick et al. (2006). Software Roadmap to Plug and Play Petaflop/s.

LBNL-59983. B. E. Bargmeyer (2006). Common sense, common logic. ISO Focus 3 (3), 24-26.

LBNL-59974. Z. Zhao, L.-W. Wang, and J. Meza (2006). Motif based Hessian matrix for ab initio geometry optimization of nanostructures. Rapid communication of Physical Review B.

LBNL-59952. K. Stockinger and K. Wu (2006). Bitmap Indices for Data Warehouses. In Data Warehouses and OLAP: Concepts, Architectures and Solutions, edited by C. K. R. Wrembel, Idea Group, Inc., Vol., p. http://www-library.lbl.gov/docs/LBNL/599/52/PDF/LBNL-59952.pdf

LBNL-59949. D. Rotem, K. Stockinger, and K. Wu (2006). Minimizing I/O Costs of Multi-Dimensional Queries with Bitmap Indices. In International Conference on Scientific and Statistical Database Management (SSDBM 2006), Vienna, Austria. http://www-library.lbl.gov/docs/LBNL/599/49/PDF/LBNL-59949.pdf

LBNL-59947. David Pointcheval (2006). Strong Password-Based Authentication in TLS Using the Three-Party Group Diffie-Hellman Protocol. International Journal of Security and Networks 2, 284-96.

LBNL-59934. S. A. Williams, A. S. Almgren, and E. G. Puckett (2006). On Using a Fast Multipole Method-based Poisson Solver in an Approximate Projection Method. http://www-library.lbl.gov/docs/LBNL/599/34/PDF/LBNL-59934.pdf

LBNL-59891. E. Wes Bethel, Scott Campbell, Eli Dart, Kurt Stockinger, Kesheng Wu (2006). Accelerating Network Traffic Analytics Using Query-Driven Visualization. IEEE Symposium on Visual Analytics Science and Technology, Baltimore, MD.

LBNL-59881. Peter Nugent, Mark Sullivan, Richard Ellis, Avishay Gal-Yam, Douglas C. Leonard, D. Andrew Howell, Pierre Astier, Raymond G. Carlberg, Alex Conley, Sebastien Fabbro, Dominique Fouchez, James D. Neill, Reynald Pain, Kathy Perrett, Chris J Pritchet, Nicolas Regnault (2006). Towards a Cosmological Hubble Diagram for Type II-P Supernovae. Astrophysical Journal 645, 841-50.

LBNL-59841. Lin-wang Wang (2006). The Use of Trust Regions in Kohn-Sham Total Energy Minimization. SIAM Journal on Scientific Computing 29, 1854-75.

LBNL-59602. L. Gosink, J. Shalf, K. Stockinger, K. Wu, and W. Bethel (2006). HDF5-FastQuery: Accelerating Complex Queries on HDF Datasets using Fast Bitmap Indices. In International Conference on Scientific and Statistical Database Management (SSDBM 2006), Vienna, Austria. http://www-library.lbl.gov/docs/LBNL/596/02/PDF/LBNL-59602.pdf

LBNL-59542. M. Abdalla, E. Bresson, O. Chevassut, and D. Pointcheval (2006). Password-based Group Key Exchange in a Constant Number of Rounds. In International Workshop on Practice and Theory in Public Key Cryptography (PKC), New York, U.S.A.

LBNL-59490. P. Stinis and A. J. Chorin (2006). Numerical scaling analysis of the small-scale structure in turbulence. to be submitted for publication.

LBNL-59437. K. Stockinger, D. Rotem, A. Shoshani, and K. Wu (2006). Analyzing Enron Data: Bitmap Indexing Outperforms MySQL Queries by Several Orders of Magnitude. http://www-library.lbl.gov/docs/LBNL/594/37/PDF/LBNL-59437.pdf

LBNL-59366. Alexandre Arenas, Alexandre J. Chorin (2006). On the existence and scaling of structure functions of turbulence according to the data. Proceedings of the National Academy of Science 103, 4352-55.

LBNL-59340. J. Carter and L. Oliker (2006). Performance Evaluation of Lattice-Boltzmann Magnetohydrodynamics Simulations on Modern Parallel Vector Systems. In 2nd Teraflop Workshop, edited by M. Resch, Springer, Stuttgart, Germany. http://www-library.lbl.gov/docs/LBNL/593/40/PDF/LBNL-59340.pdf

LBNL-59272. B. Lee and L.-W. Wang (2006). Electronic Structure of zinc-blende AlGaN; Screened-Exchange Study. Physical Review B.

LBNL-59238. Michael Welcome, Charles Rendleman, Leonid Oliker, Rupak Biswas (2006). Performance Characteristics of an Adaptive Mesh Refinement Calculation on Scalar and Vector Platforms. ACM International Conference on Computing Frontiers, Ischai, Italy.

LBNL-59152. Joshua Schrier, K. Birgitta Whaley (2006). Hyperfine Coupling Constants of the Azafullerenes C19N, C59N, C69N, and C75N. Journal of Physical Chemistry A 110, 5386-5390.

LBNL-59148. Joshua Schrier, Lin-Wang Wang (2006). On the Size-Dependent Behavior of Nanocrystal-Ligand Bonds. Journal of Physical Chemistry B 110, 11982-11985.

LBNL-59147. Joshua Schrier, Lin-Wang Wang (2006). A Charge Patching Method Calculation of a Quantum Dot/Quantum Well Nanosystem. American Physical Society March Meeting, Baltimore, MD.

LBNL-58944. O. Marques, J. Riedy, and C. Voemel (2006). Benefits of IEEE-754 features in modern symmetric tridiagonal eigensolvers. SIAM Journal on Scientific Computing (SISC).

LBNL-58787. Noel D. Keen (2006). An Incompressible Navier-Stokes with Particles Algorithm and Parallel Implementation Parallel Computational Fluid Dynamics: Theory and Applications. In Parallel Computational Fluid Dynamics: Theory and Applications, ed. A Deane, G Brenner, A Ecer, D Emerson, J McDonough, J Periaux, N Satofuka, D Tromeur-Dervout, Elsevier, Amsterdam.

LBNL-58673 Pt.II. A. S. Almgren, J. B. Bell, C. A. Rendleman, and M. Zingale (2006). Low Mach Number Modeling of Type Ia Supernovae. II. Energy Evolution. Astrophysical Journal.

LBNL-57541. Michel Van Hove (2006). Using Pattern Search Methods for Surface Structure Determination of Nanomaterials. Journal of Physics: Condensed Matter 18, 8693-8706.

LBNL-57438. W. Gao, X. S. Li, C. Yang, and Z. Bai (2006). An Implementation and Evaluation of the AMLS Method for Sparse Eigenvalue Problems. ACM Trans. Math. Software.

LBNL-54709. O. Chevassut, P.-A. Fouque, P. Gaudry, and D. Pointcheval (2006). The Twist-AUgmented Technique for key Exchange. In International Workshop on Practice and Theory in Public Key Cryptography (PKC 2006), New York.

LBNL/PUB-967. SciDAC Visualization and Analytics Center for Enabling Technology. Journal of Physics: Conference Series 78, 012032.

LBNL/PUB-964. A. Shoshani (2006). The Scientific Data Management Center. http://www-library.lbl.gov/docs/PUB/964/PDF/PUB-964.pdf

LBNL/PUB-963. FastBit — Helps Finding the Proverbial Needle in a Haystack.

LBNL/PUB-959. High Performance Visualization using Query-Driven Visualization and Analytics.

LBNL/PUB-958. HDF5-FastQuery: An API for Simplifying Access to Data Storage, Retrieval, Indexing and Querying.

LBNL/PUB-954. Query-Driven Network Flow Data Analysis and Visualization.


2005

LBNL-60921. S. Dharmapurikar and V. Paxson (2005). Robust tcp stream reassembly in the presence of adversaries. In USENIX Security Symposium, Baltimore, Maryland.

LBNL-60920. V. Yegneswaran, P. Barford, and V. Paxson (2005). Using honeynets for internet situational awareness. In ACM SIGCOMM HotNets, Baltimore, Maryland.

LBNL-60919. W. Cui, V. Paxson, N. Weaver, and R. Katz (2005). Protocol-independent adaptive replay of application dialog. In Network and Distributed System Security Symposium, San Diego, CA.

LBNL-60029. A. J. Chorin and P. Stinis (2005). Problem reduction, renormalization and memory. Communications and Applied Mathematicsl Computing Sciences 1, 1-27.

LBNL-60019. A. J. Chorin and P. Krause (2005). Dimensional reduction for a Bayesian filter. Proceedings of the National Academy of Sciences 101(42), 15013-15017.

LBNL-59622. C. Ding, X. He, H. D. Simon, and R. Jin (2005). On the Equivalence of Nonnegative Matrix Factorization and K-means - Spectral Clustering. Journal of Machine Learning Research.

LBNL-59602 Ext. Abs. L. Gosink, J. Shalf, K. Stockinger, K. Wu, and W. Bethel (2005). HDF5-FastQuery: Accelerating Complex Queries on HDF Datasets Using Fast Bitmap Indices. In 2005 HDF Workshop, San Francisco, CA. http://www-library.lbl.gov/docs/LBNL/596/02/PDF/LBNL-59602_Ext_Abs.pdf

LBNL-59231. D. O. Demchenko and L.-W. Wang (2005). Optical transitions and nature of Stokes shift in spherical CdS quantum dots. Physical Review B.

LBNL-59229. E. Pourabbas and A. Shoshani (2005). The Composite OLAP-Object Data Model. http://www-library.lbl.gov/docs/LBNL/592/29/PDF/LBNL-59229.pdf

LBNL-59208. U. Consortium (2005). UPC Language Specifications V1.2. http://www-library.lbl.gov/docs/LBNL/592/08/PDF/LBNL-59208.pdf

LBNL-59207. C. Bell, D. Bonachea, R. Nishtala, and K. Yelick (2005). Optimizing Bandwidth Limited Problems Using One-Sided Communication and Overlap. In IPDPS 2006, Rhodes Island, Greece. http://www-library.lbl.gov/docs/LBNL/592/07/PDF/LBNL-59207.pdf

LBNL-59102. K. Wu, E. Otoo, and K. Suzuki (2005). Two Strategies to Speed up Connected Component Labeling Algorithms. IEEE Transactions on Pattern Analysis and Machine Intelligence.

LBNL-59071. S. Williams, J. Shalf, L. Oliker, P. Husbands, S. Kamil, and K. Yelick (2005). The Potential of the Cell Processor for Scientific Computing. In International Parallel & Distributed Processing Symposium - 2006, Rhodes Island, Greece. http://www-library.lbl.gov/docs/LBNL/590/71/PDF/LBNL-59071.pdf

LBNL-59060. D. H. Bailey and J. M. Borwein (2005). Future Prospects for Computer-Assisted Mathematics. Notices of the Canadian Mathematical Society 37(8), 2-6. http://www-library.lbl.gov/docs/LBNL/590/60/PDF/LBNL-59060.pdf

LBNL-59031. L. Grigori, J. W. Demmel, and X. S. Li (2005). Parallel Symbolic Factorization for Sparse LU with Static Pivoting. SIAM J. Scientific Computing.

LBNL-58949. Y. Zhang, X. S. Li, and O. Marques (2005). Towards an Automatic and Application-Based Eigensolver Selection. In LACSI Symposium 2005, Santa Fe, NM. http://www-library.lbl.gov/docs/LBNL/589/49/PDF/LBNL-58949.pdf

LBNL-58914. K. Yelick, S. Kamil, W. T. Kramer, L. Oliker, J. Shalf, H. Shan, and E. Strohmaier (2005). Science Driven Supercomputing Architectures: Analyzing Architectural Bottlenecks with Applications and Benchmark Probes. http://www-library.lbl.gov/docs/LBNL/589/14/PDF/LBNL-58914.pdf

LBNL-58874. G. I. Barenblatt (2005). Applied mechanics: An age-old science perpetually in rebirth. In ASME International Mechanical Engineering Congress, Orlando, FL.

LBNL-58867. K. Berket, A. Essiari, and M. R. Thompson (2005). Securing Resources in Collaborative Environments: A Peer-to-peer Approach. In The 17th IASTED International Conference on Parallel and Distributed Computing and Systems, Phoenix, AZ. http://www-library.lbl.gov/docs/LBNL/588/67/PDF/LBNL-58867.pdf

LBNL-58851. R. Sommer and V. Paxson (2005). Exploiting independent state for network intrusion detection. In Annual Computer Security Applications Conference, Tucson, AZ.

LBNL-58850. S. Kornexl, V. Paxson, H. Dreger, A. Feldmann, and R. Sommer (2005). Building a time machine for efficient recording and retrieval of high-volume network traffic. In ACM Internet Measurement Conference, Berkeley, CA.

LBNL-58849. H. Dreger, C. Kreibich, V. Paxson, and R. Sommer (2005). Enhancing the accuracy of network-based intrusion detection with host-based context. In Conference on Detection of Intrusions and Malware and Vulnerability Assessment (DIMVA), Vienna, Austria.

LBNL-58810. Y.-H. Tseng, D. E. Dietrich, and J. H. Ferziger (2005). Regional circulation of the Monterey Bay region: Hydrostatic versus nonhydrostatic modeling. Journal of Geophysical Research - Oceans 110(C9), C09015.

LBNL-58786. D. F. Martin, P. Colella, M. Anghel, and F. J. Alexander (2005). Adaptive mesh refinement for multiscale nonequilibrium physics. Computing in Science and Engineering 7(3), 24-31.

LBNL-58768. K. Stockinger, K. Wu, S. Campbell, S. Lau, M. Fisk, E. Gavrilov, A. Kent, C. E. Davis, R. Olinger, R. Young, J. Prewett, P. Weber, T. P. Caudell, E. W. Bethel, and S. Smith (2005). Network Traffic Analysis With Query Driven VisualizationSC 2005 HPC Analytics Results. In Supercomputing 2005, ACM - Association for Computing Machinery, Seattle, Washington. http://www-library.lbl.gov/docs/LBNL/587/68/PDF/LBNL-58768.pdf

LBNL-58765. D. M. Summers (2005). A three-dimensional multiscale particle dispersion satisfying a similarity condition.

LBNL-58755. D. Rotem, K. Stockinger, and K. Wu (2005). Towards Optimal Multi-Dimensional Query Processing with Bitmap Indices. http://www-library.lbl.gov/docs/LBNL/587/55/PDF/LBNL-58755.pdf

LBNL-58754. D. Rotem, K. Stockinger, and K. Wu (2005). Optimizing Candidate Check Costs for Bitmap Indices. In The ACM Conference on Information and Knowledge Management (CIKM), Bremen, Germany. http://www-library.lbl.gov/docs/LBNL/587/54/PDF/LBNL-58754.pdf

LBNL-58751. J. B. Bell, M. S. Day, J. F. Grcar, and M. J. Lijewski (2005). Active Control for Statistically Stationary Premixed Flame Simulations. Communications in Applied Mathematics and Computational Science.

LBNL-58710. L. A. Drummond and O. A. Marques (2005). An Overview of the Advanced CompuTational Software (ACTS) Collection. ACM Transactions on Mathematical Software 31(3), 282-301. http://www-library.lbl.gov/docs/LBNL/587/10/PDF/LBNL-58710.pdf

LBNL-58707. J. B. Bell, M. Day, V. Beckner, C. Rendleman, A. L. Kuhl, and P. Neuwald (2005). Numerical Simulation of Shock-Dispersed Fuel Charges. In HPCMP Users Group Conference 2005, IEEE, Nashville, TN. http://www-library.lbl.gov/docs/LBNL/587/07/PDF/LBNL-58707.pdf

LBNL-58693. J. R. Burruss, T. W. Fredian, and M. R. Thompson (2005). Security on the US Fusion Grid. In Fifth International Atomic Energy Agency (IAEA) Technical Meeting onControl, Data Acquisition, and Remote Participation for Fusion Research, Budapest, Hungary. http://www-library.lbl.gov/docs/LBNL/586/93/PDF/LBNL-58693.pdf

LBNL-58691. J. R. Burruss, T. W. Fredian, and M. R. Thompson (2005). Simplifying fusiongrid security. In Challenges of Large Applications in Distributed Environments (CLADE) at HPDC 14, edited by A. Sussman, IEEE, Research Triangle Park, N. C. http://www-library.lbl.gov/docs/LBNL/586/91/PDF/LBNL-58691.pdf

LBNL-58673. A. S. Almgren, J. B. Bell, C. A. Rendleman, and M. Zingale (2005). Low Mach Number Modeling of Type Ia Supernovae. Astrophysical Journal 637, 922-36. http://www-library.lbl.gov/docs/LBNL/586/73/PDF/LBNL-58673.pdf

LBNL-58658. A. Pinar and B. Hendrickson (2005). Combinatorial Parallel and Scientific Computing. In Parallel Processing for Scientific Computing, edited by M. H. Padma Raghavan, Horst Simon, SIAM, Vol., p. http://www-library.lbl.gov/docs/LBNL/586/58/PDF/LBNL-58658.pdf | http://www-library.lbl.gov/docs/LBNL/586/58/PS/LBNL-58658.ps

LBNL-58654. X. S. Li, W. Gao, P. J. R. Husbands, C. Yang, and E. G. Ng (2005). The Roles of Sparse Direct Methods in Large-scale Simulations. In SciDAC 2005, San Francisco, CA. http://www-library.lbl.gov/docs/LBNL/586/54/PDF/LBNL-58654.pdf

LBNL-58623. B. D. Santer, T. M. L. Wigley, C. Mears, F. J. Wentz, S. A. Klein, D. J. Seidel, K. E. Taylor, P. W. Thorne, M. F. Wehner, P. J. Gleckler, J. S. Boyle, W. D. Collins, K. W. Dixon, C. Doutriaux, M. Free, Q. Fu, J. E. Hansen, G. S. Jones, R. Ruedy, T. R. Karl, J. R. Lanzante, G. A. Meehl, V. Ramaswamy, G. Russell, and G. A. Schmidt (2005). Amplification of surface temperature trends and variability in the tropical atmosphere. Science 309(5740), 1551-1556. http://www-library.lbl.gov/docs/LBNL/586/23/PDF/LBNL-58623.pdf

LBNL-58622. M. Wehner (2005). The impact of SciDAC on US climate change research and the IPCC AR4. In SciDAC (Scientific Discovery through Advanced Computing Program), San Francisco, CA, USA. http://www-library.lbl.gov/docs/LBNL/586/22/PDF/LBNL-58622.pdf

LBNL-58531. E. Strohmaier, H. W. Meuer, J. Dongarra, and H. D. Simon (2005). TOP500 Supercomputers for June 2005. http://www-library.lbl.gov/docs/LBNL/585/31/PDF/LBNL-58531.pdf

LBNL-58515 Abs. F. Bartolome, J. Herrero-Albillos, L. Garcia, A. Young, T. Funk, and E. Arenholz (2005). Antiferromagnetic arrangement in paramagnetic ErCo2. In 50th Annual Conference on Magnetism and Magnetic Materials, San Jose, California, USA. http://www-library.lbl.gov/docs/LBNL/585/15/PDF/LBNL-58515_Abs.pdf

LBNL-58443. E. Strohmaier, D. J. J., H. W. Meuer, and H. D. Simon (2005). Recent Trends in the Marketplace of High Performance Computing. Parallel Computing 31, 261-273. http://www-library.lbl.gov/docs/LBNL/584/43/PDF/LBNL-58443.pdf

LBNL-58442. E. Strohmaier (2005). 20 Years Supercomputer Market Analysis. In International Supercomputing Conference, Heidelberg, Germany. http://www-library.lbl.gov/docs/LBNL/584/42/PDF/LBNL-58442.pdf

LBNL-58441. J. Weinberg, A. Snavely, M. O. McCracken, and E. Strohmaier (2005). Quantifying Locality in the Memory Access Patterns of HPC Applications. In SC 2005, Seattle, WA. http://www-library.lbl.gov/docs/LBNL/584/41/PDF/LBNL-58441.pdf

LBNL-58426. K. Stockinger, K. Wu, R. Brun, and P. Canal (2005). Bitmap Indices for Fast End-User Physics Analysis in ROOT. Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment.

LBNL-58413. P. Worley, P. Roth, J. Candy, H. Shan, G. Mahinthakumar, S. Sreepathi, L. Carrington, T. Kaiser, A. Snavely, D. Reed, Y. Zhang, K. Huck, A. Malony, S. Shende, S. Moore, and F. Wolf (2005). Performance Analysis of GYRO: A Tool Evaluation. In SciDAC Scientific Discovery through Advanced Computing, 2005, San Francisco, CA. http://www-library.lbl.gov/docs/LBNL/584/13/PDF/LBNL-58413.pdf

LBNL-58411. H. Shan and E. Strohmaier (2005). MPI, SHMEM, and UPC Performance on the Cray X1 - A Case Study using APEX-Map. In Cray User Group Conference 2005, Albuquerque, NM. http://www-library.lbl.gov/docs/LBNL/584/11/PDF/LBNL-58411.pdf

LBNL-58410. E. Strohmaier and H. Shan (2005). Apex-Map: A Synthetic Scalable Benchmark Probe to Explore Data Access Performance on Highly Parallel Systems. In EuroPar 2005, Lisbon, Portugal. http://www-library.lbl.gov/docs/LBNL/584/10/PDF/LBNL-58410.pdf

LBNL-58409. E. Strohmaier and H. Shan (2005). Apex-Map: A Global Data Access Benchmark to Analyze HPC Systems and Parallel Programming Paradigms. In SC 05, Seattle, WA. http://www-library.lbl.gov/docs/LBNL/584/09/PDF/LBNL-58409.pdf

LBNL-58387. A. P. Craig, R. L. Jacob, B. Kauffman, T. Bettge, J. Larson, E. Ong, C. Ding, and Y. He (2005). Cpl6: The New Extensible, High-Performance Parallel Coupler for the Community Climate System Model. International Journal of High Performance Computing Applications 19(3), 309-27. http://www-library.lbl.gov/docs/LBNL/583/87/PDF/LBNL-58387.pdf

LBNL-58385. Y. He and C. H. Q. Ding (2005). Coupling Multi-Component Models with MPH on Distributed Memory Computer Architectures. International Journal of High Performance Computing Applications.

LBNL-58382. W. Chen, C. Iancu, and K. Yelick (2005). Communication Optimizations for Fine-Grained UPC Applications. In The Fourteenth International Conference on Parallel Architectures and Compilation Techniques, Saint Louis, MO. http://www-library.lbl.gov/docs/LBNL/583/82/PDF/LBNL-58382.pdf

LBNL-58381. C. Iancu, H. Parry, and P. Hargrove (2005). Hunting the Overlap. In The Fourteenth International Conference on Parallel Architectures and Compilation Techniques, Saint Louis, MO. http://www-library.lbl.gov/docs/LBNL/583/81/PDF/LBNL-58381.pdf

LBNL-58339. C. Yang (2005). Solving Large-scale Eigenvalue Problems in SciDAC Applications. In SciDAC 2005, edited by T. Mezzacappa, Institute of Physics Publishing, San Francisco, CA. http://www-library.lbl.gov/docs/LBNL/583/39/PDF/LBNL-58339.pdf

LBNL-58336. P. Nugent (2005). UV Spectroscopy of Type Ia Supernovae at Low- and High-Redshift. In 1604-2004 Supernovae as Cosmological Lighthouses, edited by T. e. al., ASP, Padua, Italy. http://www-library.lbl.gov/docs/LBNL/583/36/PDF/LBNL-58336.pdf | http://www-library.lbl.gov/

LBNL-58330. S. Nobili, R. Amanullah, G. Garavini, A. Goobar, C. Lidman, V. Stanishev, G. Aldering, P. Antilogus, P. Astier, M. S. Burns, A. Conley, S. E. Deustua, R. Ellis, S. Fabbro, V. Fadeyev, G. Folatelli, R. Gibbons, G. Goldhaber, D. E. Groom, I. Hook, D. A. Howell, A. G. Kim, R. A. Knop, P. E. Nugent, R. Pain, S. Perlmutter, R. Quimby, J. Raux, N. Regnault, P. Ruiz-Lapuente, G. Sainton, K. Schahmaneche, E. Smith, A. L. Spadafora, R. C. Thomas, and L. Wang (2005). Restframe I-band Hubble diagram for type Ia supernovae up to redshift z ~ 0.5. Astronomy and Astrophysics 437, 789-804. http://www-library.lbl.gov/docs/LBNL/583/30/PDF/LBNL-58330.pdf | http://www-library.lbl.gov/

LBNL-58295. A. Shoshani, A. Sim, and K. Stockinger (2005). RRS: Replica Registration Service for Data Grids. In VLDB Workshop on Data Management in Grids, Trondheim, Norway. http://www-library.lbl.gov/docs/LBNL/582/95/PDF/LBNL-58295.pdf

LBNL-58253. S. W. Williams, J. Shalf, L. Oliker, P. Husbands, and K. Yelick (2005). Dense and Sparse Matrix Operations on the Cell Processor. In 18th International Conference on Parallel and Distributed Computing Systems, Las Vegas, NV. http://www-library.lbl.gov/docs/LBNL/582/53/PDF/LBNL-58253.pdf

LBNL-58175. M. Abdalla, O. Chevassut, P.-A. Fouque, and D. Pointcheval (2005). A Simple Threshold Authenticated Key Exchange from Short Secrets. In Asiacrypt, Chennai, India.

LBNL-58171. E. W. Bethel and J. M. Shalf (2005). Algorithms, Frameworks and Toolsets for High Performance, Remote and Distributed Visualization. http://www-library.lbl.gov/docs/LBNL/581/71/PDF/LBNL-58171.pdf

LBNL-58169. C. Crawford, O. Kreylos, B. Hamann, and S. Crivelli (2005). Visualization of Force Fields in Protein Structure Prediction. In IEEE Visualization 2005, Minneapolis, NM. http://www-library.lbl.gov/docs/LBNL/581/69/PDF/LBNL-58169.pdf

LBNL-58004. J. Carter, L. Oliker, and J. Shalf (2005). Performance Evaluation of Plasma Physics and Astrophysics Applications on Modern Parallel Vector Systems. In VECPAR'06 7th International Conference on High Performance Computing for Computational Science, edited by J. D. M. Daydé, V. Hernandez and J.M.L.M. Palma, Springer, Rio de Janeiro, Brazil.

LBNL-58002. J. Carter, M. Soe, L. Oliker, Y. Tsuda, G. Vahala, L. Vahala, and A. Macnab (2005). Magnetohydrodynamic Turbulence Simulations on the Earth Simulator Using the Lattice Boltzmann Method. In Conference on High Performance Computing, Networking and Storage, edited by B. B. Jeff Kuehn, IEEE Computer Society Press, Seattle, WA. http://www-library.lbl.gov/docs/LBNL/580/02/PDF/LBNL-58002.pdf | http://www-library.lbl.gov/docs/LBNL/580/02/SRC/LBNL-58002.doc

LBNL-58001. J. Borrill, J. Carter, L. Oliker, D. Skinner, and R. Biswas (2005). Integrated Performance Monitoring of a Cosmology Application on Leading HEC Platforms. In THE 2005 INTERNATIONAL CONFERENCE ON PARALLEL PROCESSING (ICPP-05), edited by L. N. Olav Lynse, IEEE Computer Society, Univ. of Oslo, Norway, 00. http://www-library.lbl.gov/docs/LBNL/580/01/PDF/LBNL-58001.pdf | http://www-library.lbl.gov/

LBNL-57994. V. Donde, V. Lopez, B. Lesieutre, A. Pinar, C. Yang, and J. Meza (2005). Identification of Severe Multiple Contingencies in Electric Power Networks. In North American Power Symposium, Ames, IA.

LBNL-57982. K. Wu (2005). FastBit: An Efficient Indexing Technology For Accelerating Data-Intensive Science. In SciDAC 2005, San Francisco, CA. http://www-library.lbl.gov/docs/LBNL/579/82/PDF/LBNL-57982.pdf

LBNL-57950. J.-W. Luo, S.-S. Li, J.-B. Xia, and L.-W. Wang (2005). Photoluminescence pressure coefficients of InAs/GaAs quantum dots. Physical Review B 71, 245315(1-5). http://www-library.lbl.gov/

LBNL-57949. L. Manna, L. W. Wang, R. Cingolani, and A. P. Alivisatos (2005). First-principles modeling of unpassivated and surfactant-passivated bulk facets of wurtzite CdSe: A Model System for Studying the Anisotropic Growth of CdSe Nanocrystals. Journal of Physical Chemistry B 109(13), 6183-92.

LBNL-57948. X. Cartoixa and L.-W. Wang (2005). Microscopic dielectric response functions in semiconductor quantum dots. Physical Review Letter 94, 236804(1-4).

LBNL-57947. J. W. Luo, S. S. Li, J. B. Xia, and L.-W. Wang (2005). A comparative study for colloidal quantum dot calculations. Applied Physics Letter.

LBNL-57945. J. Li and L.-W. Wang (2005). Band-structure-corrected local density approximation study of semiconductor quantum dots and wires. Physical Review B 72(12), 125325(1-15).

LBNL-57944. B. Lee and L.-W. Wang (2005). Electronic structure of Calcium hexaborides. Applied Physics Letters 87, 262509. http://www-library.lbl.gov/docs/LBNL/579/44/PDF/LBNL-57944.pdf | http://www-library.lbl.gov/docs/LBNL/579/44/PS/LBNL-57944.ps

LBNL-57904. G. I. Barenblatt and A. J. Chorin (2005). A mathematical model for the scaling of turbulence. Proceedings of the National Academy of Sciences 101(42), 15023-15026.

LBNL-57860. R. J. Foley, A. V. Filippenko, D. C. Leonard, A. G. Riess, P. Nugent, and S. Perlmutter (2005). A Definitive Measurement of Time Dilation in the Spectral Evolution of the Moderate-Redshift Type Ia Supernova 1997ex. The Astrophysical Journal 626, 11-14.

LBNL-57842. G. I. Barenblatt, A. J. Chorin, and V. M. Prostokishin (2005). A note concerning the Lighthill "sandwich model" of tropical cyclones. In ASME International Mechanical Engineering Congress, Orlando, FL.

LBNL-57677. K. Wu, J. Gu, J. Lauret, A. M. Poskanzer, A. Shoshani, A. Sim, and W.-M. Zhang (2005). Grid Collector: Facilitating Efficient Selective Access from Data Grids. In International Supercomputer Conference, Heidelberg, Germany. http://www-library.lbl.gov/docs/LBNL/576/77/PDF/LBNL-57677.pdf

LBNL-57630 JArt. R. Pang, M. Allman, V. Paxson, and J. Lee (2005). The devil and packet trace anonymization. Computer Communication Review3 36(1).

LBNL-57621. D. Rotem, K. Stockinger, and K. Wu (2005). Optimizing I/O Costs of Multi-Dimensional Queries using Bitmap Indices. In International Conference on Database and Expert Systems Applications (DEXA), Copenhagen, Denmark. http://www-library.lbl.gov/docs/LBNL/576/21/PDF/LBNL-57621.pdf

LBNL-57609 Ext. Abs. M. Abdalla, B. Emmanuel, O. Chevassut, B. Moeller, and D. Pointcheval (2005). Provably Secure Password-based Authentication in TLS. In ACM Symposium on Information, Computer and Communications Security, Taipei, Taiwan. http://www-library.lbl.gov/docs/LBNL/576/09/PDF/LBNL-57609.pdf

LBNL-57607 Ext. Abs. A. Adelmann, R. D. Ryne, C. Siegerist, and J. M. Shalf (2005). H5Part: A Portable High Performance Parallel Data Interface for Particle Simulations. In Particle Accelerator Conference, edited by C. Horak, IEEE, Knoxville, TN. http://www-library.lbl.gov/docs/LBNL/576/07/PDF/LBNL-57607_Ext_Abs.pdf

LBNL-57603. A. Adelmann, R. D. Ryne, J. M. Shalf, and C. Siegerist (2005). From Visualisation to Data Mining with Large Data Sets. In Particle Accelerator Conference 2005, Knoxville, Tennessee. http://www-library.lbl.gov/docs/LBNL/576/03/PDF/LBNL-57603.pdf

LBNL-57581. D. H. Bailey, J. M. Borwein, and D. M. Bradley (2005). Experimental Determination of Apery-Like Identities for Zeta(2n+2). Experimental Mathematics.

LBNL-57528. J. Chen, I. Yoon, and E. W. Bethel (2005). Interactive, Internet Delivery of Scientific Visualization via Structured, Prerendered Multiresolution Imagery. In IEEE Visualization 2005, Minneapolis, MN. http://www-library.lbl.gov/docs/LBNL/575/28/PDF/LBNL-57528.pdf

LBNL-57527. K. Wu and E. Otoo (2005). A Simpler Proof Of The Average Case Complexity Of Union-Find With Path Compression. http://www-library.lbl.gov/docs/LBNL/575/27/PDF/LBNL-57527.pdf

LBNL-57511. K. Stockinger, J. Shalf, K. Wu, and E. W. Bethel (2005). Query-Driven Visualization of Large Data Sets. In IEEE Visualization, Minneapolis, MN. http://www-library.lbl.gov/docs/LBNL/575/11/PDF/LBNL-57511.pdf

LBNL-57500. J. A. Greenough, B. R. de Supinski, R. K. Yates, C. A. Rendleman, D. Skinner, V. Beckner, M. Lijewski, J. Bell, and J. C. Sexton (2005). Performance of a Block Structured, Hierarchical Adaptive Mesh Refinement Code on the 64k Node IBM BlueGene/L Computer. In SC|05 International Conference for High Performance Computing Networking and Storage, Seattle, WA. http://www-library.lbl.gov/docs/LBNL/575/00/PDF/LBNL-57500.pdf

LBNL-57434. C. Yang, J. Meza, and L.-W. Wang (2005). A Constrained Optimization Algorithm for Total Energy Minimization in Electronic Structure Calculation. Journal of Computational Physics.

LBNL-57432 JArt. B. Emmanuel, C. Olivier, and P. David (2005). A Security Solution for IEEE 802.11's Ad-hoc Mode: Password-Authentication and Group Diffie-Hellman Key Exchange. International Journal of Wireless and Mobile Computing (SI), 1741-1084. http://www-library.lbl.gov/docs/LBNL/574/32/PDF/LBNL-57432_Conf.pdf

LBNL-57418. B. Xue, N. Max, and C. Siegerist (2005). Anisotropic Ellipsoidal Smoothing of Volume Data. In IEEE Visualization 2005, Minneapolis, MN. http://www-library.lbl.gov/docs/LBNL/574/18/PDF/LBNL-57418.pdf

LBNL-57161. C. Gatti-Bono and C. Phillip (2005). A Filtering Method For Gravitationally Stratified Flows. Monthly Weather Review.

LBNL-57158. C. Gatti-Bono and P. Colella (2005). An Anelastic Allspeed Projection Method for Gravitationally Stratified Flows. Journal of Computational Physics.

LBNL-57156. P. Schwartz, D. Adalsteinsson, P. Colella, A. P. Arkin, and M. Onsum (2005). Numerical Computation of Diffusion on a Surface. Proceedings of the National Academy of Science 102(32), 11151-56. http://www-library.lbl.gov/docs/LBNL/571/56/PDF/LBNL-57156.pdf

LBNL-57134. V. M. Markowitz, F. Korzeniewski, K. Palaniappan, and E. Szeto (2005). The Integrated Microbial Genomes (IMG) System: A Case Study in Biological Data Management. In VLDB 2005, Trondheim, Norway.

LBNL-57099 Abs. L. A. Drummond (2005). The Forthcoming Petascale Systems Era: Got Tools? In Salishan Conference on High Speed Computing, Salishan, OR. http://www-library.lbl.gov/docs/LBNL/570/99/PDF/LBNL-57099_Abs.pdf

LBNL-57060. D. K. Gunter, B. L. Tierney, and S. J. Bailey (2005). Scalable Analysis of Distributed Workflow Traces. In The 2005 International Conference on Parallel and Distributed Processing Techniques and Applications, Las Vegas, NV. http://www-library.lbl.gov/docs/LBNL/570/60/PDF/LBNL-57060.pdf

LBNL-57023 Conf. K. Stockinger, J. Shalf, W. Bethel, and K. Wu (2005). DEX: Increasing the Capability of Scientific Data Analysis Pipelines by Using Efficient Bitmap Indices to Accelerate Scientific Visualization. In International conference on Scientific and Statistical Database Management (SSDBM 2005), Santa Barbara, California. http://www-library.lbl.gov/docs/LBNL/570/23/PDF/LBNL-57023_Conf.pdf

LBNL-57023. K. Stockinger, J. Shalf, W. Bethel, and K. Wu (2005). DEX: Increasing the Capability of Scientific Data Analysis Pipelines by Using Efficient Bitmap Indices to Accelerate Scientific Visualization. http://www-library.lbl.gov/docs/LBNL/570/23/PDF/LBNL-57023.pdf

LBNL-56992. P. Colella and T. Wen (2005). Adaptive mesh refinement in titanium. In 19th International Parallel and Distributed Processing Symposium, IEEE, Denver, CO. http://www-library.lbl.gov/docs/LBNL/569/92/PDF/LBNL-56992.pdf

LBNL-56966. M. Zingale, S. E. Woosley, C. A. Rendleman, M. S. Day, and J. B. Bell (2005). Three-dimensional numerical simulations of Rayleigh-Taylor unstable flames in type Ia supernovae. Astrophysical Journal 632(2pt1), 1021-34. http://www-library.lbl.gov/docs/LBNL/569/66/PDF/LBNL-56966.pdf

LBNL-56965. J. Demmel, Y. Hida, W. Kahan, X. S. Li, S. Mukherjee, and E. J. Riedy (2005). Error bounds from extra precise iterative refinement. ACM Trans. on Mathematical Software.

LBNL-56885. R. Kupferman (2005). On the linear stability of plane couette flow for an Oldroyd-B fluid and its numerical approximation. Journal of Non-Newtonian Fluid Mechanics 127, 169-190.

LBNL-56882 Ext. Abs. M. S. Day, J. B. Bell, J. F. Grcar, and V. E. Beckner (2005). Numerical control of 3d turbulent premixed flame simulations. In 20th International Colloquium on the Dynamics of Explosions and Reactive Systems, McGill University, Montreal, Canada. http://www-library.lbl.gov/docs/LBNL/568/82/PDF/LBNL-56882_Ext_Abs.pdf

LBNL-56876. A. Pinar and C. Aykanat (2005). One-dimensional partitioning for heterogeneous systems. Journal of Parallel and Distributed Systems.

LBNL-56864. K. Wu, E. Otoo, and A. Shoshani (2005). Optimizing connected component labeling algorithms. In SPIE Medical Imaging 2005, edited by J. W. Doug Milam, Jonathan McConnell, Kerry Garvin, Lisa Polinder. Matt Novak, Dara Burrows, SPIE, San Diego, California, USA.

LBNL-56861. P. Amestoy, X. S. Li, and S. Pralet (2005). Unsymmetric ordering using a constrained Markowitz scheme. SIAM J. Matrix Analysis and Applications.

LBNL-54853. M. Humphrey, M. R. Thompson, and K. R. Jackson (2005). Security for grids. Proceedings of the IEEE 93(3), 644-652. http://www-library.lbl.gov/docs/LBNL/548/53/PDF/LBNL-54853.pdf

LBNL-54498. A. Pinar and V. Vassilevska (2005). Finding Nonoverlapping Substructures of a Sparse Matrix. Electric Transactions Numerical Analysis 21, 107-124. http://www-library.lbl.gov/docs/LBNL/544/98/PDF/LBNL-54498.pdf | http://www-library.lbl.gov/docs/LBNL/544/98/PS/LBNL-54498.ps

LBNL-54484. P. Stinis (2005). A comparative study of two stochastic mode reduction methods. Physica D 213(2), 197-213.

LBNL-54479. T. Deschamps, R. Malladi, and I. Ravve (2005). Fast evolution of image manifolds and application to filtering and segmentation in 3D medical images. IEEE Transactions on Visualization and Computer Graphics 10, 525-535.

LBNL-54477. U. Adiga, A. Idica, R. F. Gonzalez, and C. Ortiz de Solorzano (2005). An efficient approach to segmentation of cell-nuclei in tissue images: application to breast tissue blocks.

LBNL-54198. J. B. Bell, M. S. Day, I. G. Shepherd, M. Johnson, R. K. Cheng, J. F. Grcar, V. E. Beckner, and M. J. Lijewski (2005). Numerical simulation of a laboratory-scale turbulent V-flame. Proceedings of the National Academy of Sciences 102(29), 10006-11. http://www-library.lbl.gov/docs/LBNL/541/98/PDF/LBNL-54198_Journal.pdf

LBNL-52482. A. Pinar, E. Chow, and A. Pothen (2005). Combinatorial Algorithms for Computing Column Space Bases That Have Sparse Inverses. Electronic Transactions on Numerical Algorithms.

LBNL-52000. J.-D. Yu, S. Sakai, and J. Sethian (2005). A coupled quadrilateral grid level set projection method applied to ink jet simulation. Journal of Computational Physics 205(1), 227-51.

LBNL-51996. P. Stinis (2005). A Hybrid Method for the Inviscid Burgers Equation. Discrete and Continuous Dynamical Systems 9(4), 793-799.

LBNL-51991. F. A. Grunbaum and L. F. Matusevich (2005). Explicit inversion formulas for a model in diffuse tomography. Advances in Applied Mathematics 29(2), 172-83.

LBNL-48661. A. J. Chorin, O. H. Hald, and R. Kupferman (2005). Optimal prediction with memory. Physica D 166, 239-257.

LBNL-44867. J. Wright, S. Yon, and C. Pozrikidis (2005). Numerical studies of two-dimensional Faraday Oscillations of Inviscid Fluids. Journal of Fluid Mechanics 402, 1-32.

LBNL/PUB-3186. G. C. Smith III (2005). OS X Security Set-Up and User's Guide. http://www-library.lbl.gov/docs/PUB/3186/PDF/PUB-3186.pdf | http://www-library.lbl.gov/docs/PUB/3186/SRC/PUB-3186.doc

LBNL/PUB-947. M. A. Richards and H. D. Simon (2005). Enabling Computational Science and Engineering at Berkeley.


2004

LBNL-58848. R. Pang, V. Yegneswaran, P. Barford, V. Paxson, and L. Peterson (2004). Characteristics of internet background radiation. In ACM Internet Measurement Conference, Taormina, Italy.

LBNL-58843. H. Dreger, A. Feldmann, V. Paxson, and R. Sommer (2004). Operational experiences with high-volume network intrusion detection. In ACM CCS, Washington, DC.

LBNL-58539. E. Strohmaier, H. W. Meuer, J. Dongarra, and H. D. Simon (2004). TOP500 Supercomputers for June 2004. http://www-library.lbl.gov/docs/LBNL/585/39/PDF/LBNL-58539.pdf

LBNL-58532. E. Strohmaier, H. W. Meuer, J. Dongarra, and H. D. Simon (2004). TOP500 Supercomputers for November 2004. http://www-library.lbl.gov/docs/LBNL/585/32/PDF/LBNL-58532.pdf

LBNL-58444. E. Strohmaier, D. J. J., H. W. Meuer, and H. D. Simon (2004). Recent Trends in the Marketplace of High Performance Computing. Cyberinfrastructure Technology Watch 1(1), 12-16.

LBNL-58202. D. Konerding (2004). An Essential Guide to the Basic Local Alignment Search Tool: BLAST by Ian Korf, Mark Yandell and Joseph Bledell. Briefings in Bioinformatics 5(1), 93-94.

LBNL-58092. K. Wu, A. Shoshani, W.-M. Zhang, J. Lauret, and V. Perevoztchikov (2004). Grid Collector: Using an event catalog to speed up user analysis in distributed environment. In Computing in High Energy and Nuclear Physics (CHEP) 2004, Interlaken, Switzerland. http://www-library.lbl.gov/docs/LBNL/580/92/PDF/LBNL-58092.pdf

LBNL-57859. C. Lidman, D. A. Howell, G. Folatelli, G. Garavini, S. Nobili, G. Aldering, R. Amanullah, P. Antilogus, P. Astier, G. Blanc, M. S. Burns, A. Conley, S. E. Deustua, M. Doi, R. Ellis, S. Fabbro, V. Fadeyev, R. Gibbons, G. Goldhaber, A. Goobar, D. E. Groom, I. Hook, N. Kashikawa, A. G. Kim, R. A. Knop, B. C. Lee, J. Mendez, T. Morokuma, K. Motohara, P. E. Nugent, R. Pain, S. Perlmutter, V. Prasad, R. Quimby, J. Raux, N. Regnault, P. Ruiz-Lapuente, G. Sainton, B. E. Schaefer, K. Schahmaneche, E. Smith, A. L. Spadafora, V. Stanishev, N. A. Walton, L. Wang, W. M. Wood-Vasey, and N. Yasuda (2004). Spectroscopic confirmation of high-redshift supernovae with the ESO VLT. Astronomy and Astrophysics 430, 843-851.

LBNL-57074. J. F. Grcar (2004). John von Neumann Birthday Centennial. SIAM News 38(2), 1. http://www-library.lbl.gov/docs/LBNL/570/74/PDF/LBNL-57074.pdf

LBNL-56977. I. Bowman, J. Shalf, K.-L. Ma, and W. Bethel (2004). Performance Modeling for 3D Visualization in a Heterogeneous Computing Environment. http://www-library.lbl.gov/docs/LBNL/569/77/PDF/LBNL-56977.pdf

LBNL-56936. D. Rotem, K. Stockinger, and K. Wu (2004). Efficient binning for bitmap indices on high-cardinality attributes. http://www-library.lbl.gov/docs/LBNL/569/36/PDF/LBNL-56936.pdf

LBNL-56772. J. F. Grcar, M. S. Day, and J. B. Bell (2004). A taxonomy of integral reaction path analysis. Combustion Theory and Modelling.

LBNL-56729. J. P. U. Fynbo, J. Gorosabel, A. Smette, A. Fruchter, J. Hjorth, K. Pedersen, A. Levan, I. Burud, K. Sahu, P. M. Vreeswijk, E. Bergeron, C. Kouveliotou, N. Tanvir, S. E. Thorsett, R. A. M. J. Wijers, A. Castro-Tirado, P. Jakobsson, J. M. Castro Ceron, P. Garnavich, S. T. Holland, P. Moller, P. Nugent, E. Pian, J. Rhoads, D. Watson, and S. Woosley (2004). On the afterglow and host galaxy of GRB 021004: A comprehensive study with the Hubble Space Telescope. Astrophysical Journal 633(1pt1), 317-27. http://www-library.lbl.gov/docs/LBNL/567/29/PDF/LBNL-56729.pdf

LBNL-56715. D. Stern, P. G. van Dokkum, P. Nugent, D. J. Sand, R. S. Ellis, M. Sullivan, J. S. Bloom, D. A. Frail, J.-P. Kneib, L. V. E. Koopmans, and T. Treu (2004). Discovery of a transient U-band dropout in a lyman break survey: A tidally disrupted star at z=3.3? Astrophysical Journal 612, 690-97.

LBNL-56627. Z. Dragojlovic, F. Najmabadi, and M. S. Day (2004). An embedded boundary method for viscous, conducting compressible flow. Journal of Computational Physics.

LBNL-56607. P. Schwartz, M. Barad, P. Colella, and T. Ligocki (2004). A cartesian grid embedded boundary method for the heat equation and poisson's equation in three dimensions. Journal of Computational Physics 211(2), 531-50. http://www-library.lbl.gov/docs/LBNL/566/07/PDF/LBNL-56607.pdf

LBNL-56545. H. Simon, W. Kramer, W. Saphir, J. Shalf, D. Bailey, L. Oliker, M. Banda, C. W. McCurdy, J. Hules, A. Canning, M. Day, P. Colella, D. Serafini, M. Wehner, and P. Nugent (2004). Science-driven system architecture: A new process for leadership class computing. Journal of the Earth Simulator 2, 2-10. http://www-library.lbl.gov/docs/LBNL/565/45/PDF/LBNL-56545.pdf

LBNL-56495. D. Bonachea (2004). Proposal for extending the UPC memory copy library functions and suppo rting extensions to GASNet, Version 1.0. http://www-library.lbl.gov/docs/LBNL/564/95/PDF/LBNL-56495.pdf

LBNL-56420. P. Colella, D. T. Graves, B. J. Keen, and D. Modiano (2004). A cartesian grid embedded boundary method for hyperbolic conservation laws. Journal of Computational Physics 51(12), 1183-86. http://www-library.lbl.gov/docs/LBNL/564/20/PDF/LBNL-56420.pdf

LBNL-56402 V.6. K. Berket, A. Essiari, D. Gunter, and W. Hoschek (2004). Peer-to-peer I/O (P2PIO) protocol specification Version 0.6. http://www-library.lbl.gov/docs/LBNL/564/02/PDF/LBNL-56402_v6.pdf

LBNL-56376. K. Stockinger and K. Wu (2004). Improved searching for spatial features in spatio-temporal data. http://www-library.lbl.gov/docs/LBNL/563/76/PDF/LBNL-56376.pdf | http://www-library.lbl.gov/docs/LBNL/563/76/PS/LBNL-56376.ps

LBNL-56361. F. Liang, S. Meder, O. Chevassut, and F. Siebenlist (2004). Secure password-based authenticated key exchange for web services. In ACM Computer and Communications Security (ACM CCS), Workshop on Secure Web Services (SWS), Washington, DC. http://www-library.lbl.gov/docs/LBNL/563/61/PDF/LBNL-56361.pdf

LBNL-56325. C. Yang, W. Gao, Z. Bai, X. Li, L.-Q. Lee, P. Husbands, and E. G. Ng (2004). Algebraic sub-structuring for electromagnetic applications. In PARA'04 Workshop on State-of-the-art in Scientific Computing, Copenhagen, Denmark. http://www-library.lbl.gov/docs/LBNL/563/25/PDF/LBNL-56325.pdf

LBNL-56306. E. Strohmaier and H. Shan (2004). Architecture independent performance characterization and benchmarking for scientific applications. In MASCOTS 2004, Volendam, The Netherlands. http://www-library.lbl.gov/docs/LBNL/563/06/PDF/LBNL-56306.pdf

LBNL-56260 Conf. L. A. Drummond, V. Hernandez, O. Marques, J. E. Roman, and V. Vidal (2004). A Survey of High-Quality Computational Libraries and their Impact in Science and Engineering Applications. In High Performance Computing for Computational Science, VECPAR 2004, edited by J. D. M. Dayde, V. Hernandez and J. Palma, Springer-Verlag, Valencia, Spain, 3402. http://www-library.lbl.gov/docs/LBNL/562/60/PDF/LBNL-56260_Conf.pdf

LBNL-56212. M. Abdalla, O. Chevassut, and D. Pointcheval (2004). One-time verifier-based encrypted key exchange. In 8th International Workshop on Practice and Theory in Public Key Cryptography (PKC), Les Diablerets, Switzerland.

LBNL-56193. E. Baron, P. E. Nugent, D. Branch, and P. H. Hauschildt (2004). Type IIP supernovae as cosmological probes: A SEAM distance to SN 1999em. Astrophysical Journal 616, 91. http://www-library.lbl.gov/docs/LBNL/561/93/PDF/LBNL-56193.pdf | http://www-library.lbl.gov/docs/LBNL/561/93/PS/LBNL-56193.ps

LBNL-56190. M. Barad and P. Colella (2004). A fourth order accurate adaptive mesh refinement method for poisson's equation. Journal of Computational Physics 209(1), 1-18. http://www-library.lbl.gov/docs/LBNL/561/90/PDF/LBNL-56190.pdf

LBNL-56116. A. Pinar and V. Vassilevska (2004). Finding nonoverlapping substructures of a sparse matrix. Electronic Transactions on Numerical Analysis 21, 107-124. http://www-library.lbl.gov/docs/LBNL/561/16/PDF/LBNL-56116.pdf

LBNL-55880. D. Trebotich, P. Colella, and G. Miller (2004). A stable and convergent scheme for viscoelastic flow in contraction channels. Journal of Computational Physics 205(1), 315-342. http://www-library.lbl.gov/docs/LBNL/558/80/PDF/LBNL-55880.pdf

LBNL-55869. R. Oliva, S. Crivelli, and J. Meza (2004). Protein-folding via divide-and-conquer optimization. In SIAM Conference on the Life Sciences, Portland, OR. http://www-library.lbl.gov/docs/LBNL/558/69/PDF/LBNL-55869.pdf

LBNL-55724. W. T. C. Kramer, A. Shoshani, D. A. Agarwal, B. R. Draney, G. Jin, G. F. Butler, and J. A. Hules (2004). Deep scientific computing requires deep data. IBM Research and Development 48(2), 209-232.

LBNL-55690. A. Pinar, T. Tao, and H. Ferhatosmanoglu (2004). Compressing bitmap indices by data reorganization. In International Conference on Data Engineering, IEEE, Tokyo, Japan. http://www-library.lbl.gov/docs/LBNL/556/90/PDF/LBNL-55690.pdf | http://www-library.lbl.gov/docs/LBNL/556/90/PS/LBNL-55690.ps

LBNL-55635. H. Shan, E. Strohmaier, and L. Oliker (2004). Optimizing performance of superscalar codes for a single Cray X1 MSP processor. In Cray Uers Group CUG 2004, Knoxville, TN. http://www-library.lbl.gov/docs/LBNL/556/35/PDF/LBNL-55635.pdf

LBNL-55612. J. Ahrens and I. Collaboration (2004). Status of the icecube neutrino observatory. In 2nd VERITAS Symposium on TeV Astrophysics of Extragalactic Sources, Chicago, 48.

LBNL-55611. M. Ackermann and A. Collaboration (2004). Amanda: status and latest results. In 39th Rencontres de Moriond on Electroweak Interactions and Unified Theories, La Thuile, Aosta Valley, Italy.

LBNL-55610. C. Spierling and I. Collaboration (2004). The icecube project. In VLVnT Workshop on Technical Aspects of a Very Large Volume Neutrino Telescope in the Mediterrenean Sea, Amsterdam, The Netherlands, astro-ph/0404090.

LBNL-55587. E. Otoo, D. Rotem, A. Romosan, and S. Seshadri (2004). File caching in data intensive scientific applications. In 1st International Workshop on Data Management in Grids, edited by none, Springer Verlag, Lecture Notes in Computer Science, LNCS, Trondheim, Norway. http://www-library.lbl.gov/docs/LBNL/555/87/PDF/LBNL-55587.pdf

LBNL-55540. K. Stockinger, K. Wu, and A. Shoshani (2004). Evaluation Strategies for Bitmap Indices with Binning. In 15th International Conference on Database and Expert Systems Applications (DEXA), edited by T. Galindo, and Traunmuller, Springer-Verlag, Zaragoza, Spain, 3180. http://www-library.lbl.gov/docs/LBNL/555/40/PDF/LBNL-55540.pdf | http://www-library.lbl.gov/docs/LBNL/555/40/PS/LBNL-55540.ps

LBNL-55531. G. H. Miller (2004). Minimal rotationally-invariant bases for hyperelasticity. SIAM Journal on Applied Mathematics 64(6), 2050-75.

LBNL-55480. L.-W. Wang (2004). Quantum transport calculations using periodic boundary conditions. Physical Review B 72, 45417. http://www-library.lbl.gov/docs/LBNL/554/80/PDF/LBNL-55480.pdf | http://www-library.lbl.gov/docs/LBNL/554/80/PS/LBNL-55480.ps

LBNL-55394 Abs. N. Shah, A. Poliakov, D. Ryaboy, M. V. Teplitsky, B. Hamann, E. M. Rubin, and I. L. Dubchak (2004). VISTA tools for interactive visualization and analysis of multiple alignments of DNA sequences and whole genomes. In The Biology of Genomes, Cold Spring Harbor, NY, USA. http://www-library.lbl.gov/docs/LBNL/553/94/PDF/LBNL-55394_Abs.pdf

LBNL-55386. N. Shah, G. H. Weber, S. E. Dillard, and B. Hamann (2004). Volume visualization of multiple alignment of genomic DNA. In IEEE Symposium on Information Visualization, IEEE Press, Austin TX. http://www-library.lbl.gov/docs/LBNL/553/86/PDF/LBNL-55386.pdf

LBNL-55353. C. S. Co, A. Friedman, D. P. Grote, J.-L. Vay, E. W. Bethel, and K. I. Joy (2004). Interactive methods for exploring particle simulation data. In IEEE Visualization 2004, Austin, TX. http://www-library.lbl.gov/docs/LBNL/553/53/PDF/LBNL-55353.pdf

LBNL-55346 Abs. M. Wehner, L. Oliker, D. Parks, and W.-S. Wang (2004). High resolution atmospheric general circulation model simulations on vector and cache-based architectures. In SIAM Conference on Parallel Processing for Scientific Computing, San Francisco, CA. http://www-library.lbl.gov/docs/LBNL/553/46/HTML/LBNL-55346_Abs.html

LBNL-55302. P. K. Agarwal, R. A. Alexander, E. Apra, S. Balay, A. S. Bland, J. Colgan, E. F. D'Azevedo, J. J. Dongarra, T. H. Dunigan Jr., M. R. Fahey, R. A. Fahey, A. Geist, M. Gordon, R. J. Harrison, D. Kaushik, M. Krishnakumar, P. Luszczek, A. Mezzacappa, J. A. Nichols, J. Nieplocha, L. Oliker, T. Packwood, M. S. Pindzola, T. C. Schulthess, J. S. Vetter, J. B. White III, T. L. Windus, P. H. Worley, T. Zacharia, and T. Zacharia (2004). ORNL Cray X1 evaluation status report. In 46th Cray User Group Conference, Knoxville, TN. http://www-library.lbl.gov/docs/LBNL/553/02/PDF/LBNL-55302.pdf

LBNL-55292. J. Li and L.-W. Wang (2004). Deformation potentials of CdSe quantum dots. Applied Physics Letters 85(14), 2929-2931. http://www-library.lbl.gov/docs/LBNL/552/92/PDF/LBNL-55292.pdf

LBNL-55291. H. D. Simon, L. Oliker, A. Canning, J. Carter, S. Ethier, and J. Shalf (2004). Evaluation of leading scalar and vector architectures for scientific computations. http://www-library.lbl.gov/docs/LBNL/552/91/PDF/LBNL-55291.pdf

LBNL-55141. D. N. Kasen (2004). Aspherical supernovae. In Physics, University of California, Berkeley, Berkeley, CA. http://www-library.lbl.gov/docs/LBNL/551/41/PDF/LBNL-55141.pdf | http://www-library.lbl.gov/docs/LBNL/551/41/PS/LBNL-55141.ps

LBNL-55082. H. Shan and E. Strohmaier (2004). Performance characteristics of the Cray X1 and their implications for application performance tuning. In 18th Annual ACM International Conference on SUpercomputing, edited by G. Feautrier, Seznec, Association for Computing Machinery, St. Malo, France. http://www-library.lbl.gov/docs/LBNL/550/82/PDF/LBNL-55082.pdf

LBNL-55075. Q. Yang, B. Parvin, and M. H. Barcellos-Hoff (2004). Localization of saliency through iterative voting. In 17th International Conference of Pattern Recognition, IEEE, Cambridge, UK.

LBNL-55050. C. Yang, W. Gao, Z. Bai, X. Li, L. Lee, P. Husbands, and E. Ng (2004). An algebraic sub-structuring method for large-scale eigenvalue calculation. Society for Industrial and Applied Mathematics: Journal on Matrix Analysis and Applications.

LBNL-55031. G. Cong, M. Esser, B. Parvin, and G. Bebis (2004). Shape Metamorphism Using p-Laplacian Equation. In International Conference on Pattern Recognition, Oxford England. http://www-library.lbl.gov/docs/LBNL/550/31/PDF/LBNL-55031.pdf

LBNL-54975. K. Berket, A. Essiari, and A. Muratas (2004). PKI-based security for peer-to-peer information sharing. In The Fourth IEEE International Conference on Peer-to-Peer Computing, IEEE, Zurich, Switzerland.

LBNL-54943. D. Kasen, P. Nugent, R. C. Thomas, and L. Wang (2004). Could there be a hole in type Ia supernovae? Astrophysical Journal 610(2 pt1), 876-87. http://www-library.lbl.gov/docs/LBNL/549/43/PDF/LBNL-54943.pdf | http://www-library.lbl.gov/ | http://www-library.lbl.gov/docs/LBNL/549/43/PS/LBNL-54943.ps

LBNL-54915 Abs. C. Ding, X. He, R. F. Meraz, and S. R. Holbrook (2004). A unified representation of multi-protein complex data for modelling interaction networks. In RECOMB 2004 (Research in Computational Molecular Biology), San Diego, CA.

LBNL-54906. L. Oliker, R. Biswas, H. Shan, and W. Smith (2004). Job scheduling in a heterogenous grid environment. http://www-library.lbl.gov/docs/LBNL/549/06/PDF/LBNL-54906.pdf

LBNL-54905. L. Oliker, R. Biswas, J. Borrill, A. Canning, J. Carter, J. Djomehri, H. Shan, and D. Skinner (2004). A performance evaluation of the Cray X1 for scientific applications. In VECPAR'04: 6th International Meeting on High Performance Computing for Computational Science, Valencia, Spain. http://www-library.lbl.gov/docs/LBNL/549/05/PDF/LBNL-54905.pdf

LBNL-54904 Abs. L. Oliker (2004). Performance evaluation of the SX-6 vector architecture for scientific computations. In SIAM Parallel Processing for Scientific Computing, San Francisco, CA.

LBNL-54901. G. Griem, L. Oliker, J. Shalf, and K. Yelick (2004). Identifying performance bottlenecks on modern microarchitectures using an adaptable probe. In 3rd International Workshop on Performance Modeling, Evaluation, and Optimization of Parallel and Distributed Systems, Santa Fe, NM. http://www-library.lbl.gov/docs/LBNL/549/01/PDF/LBNL-54901.pdf

LBNL-54881. E. Otoo, D. Rotem, and A. Romosan (2004). Optimal file-bundle caching algorithms for data-grids. In SC2004 High Performance Computing, Networking and Storage Conference, Pittsburg, PA. http://www-library.lbl.gov/docs/LBNL/548/81/PDF/LBNL-54881.pdf

LBNL-54880. E. J. Otoo, D. Rotem, and S. Seshadri (2004). Efficient algorithms for multi-file caching. In 15th International Conference on Database and Expert Systems Applications, Zaragoza, Spain. http://www-library.lbl.gov/docs/LBNL/548/80/PDF/LBNL-54880.pdf

LBNL-54854. A. Sim, J. Gu, A. Shoshani, and V. Natarajan (2004). DataMover: robust terabyte-scale multi-file replication over wide-area networks. In Proceedings of the 16th International Conference on Scientific and Statistical Database Management (SSDBM 2004), Greece. http://www-library.lbl.gov/docs/LBNL/548/54/PDF/LBNL-54854.pdf

LBNL-54838 Ext. Abs. D. K. Gunter, K. Jackson, D. Konerding, J. Lee, and B. L. Tierney (2004). Essential elements for improved grid usability. In The Thirteenth IEEE International Symposium on High-Performance Distributed Computing, Honolulu, HI. http://www-library.lbl.gov/docs/LBNL/548/38/PDF/LBNL-54838_Ext_Abs.pdf

LBNL-54814. J. Li and L.-W. Wang (2004). Comparison of quantum confinement effects between quantum wires and dots. Chemistry of Materials 16(21), 4012-4015. http://www-library.lbl.gov/docs/LBNL/548/14/PDF/LBNL-54814.pdf

LBNL-54813. L.-W. Wang (2004). Effects of stacking faults on the electronic structures of quantum rods. Journal of Computational and Theoretical Nanoscience 1(3), 298-302. http://www-library.lbl.gov/docs/LBNL/548/13/PDF/LBNL-54813.pdf

LBNL-54811. L.-W. Wang and J. Li (2004). First principle thousand atom quantum dot calculations. Physical Review B 69, 153302. http://www-library.lbl.gov/docs/LBNL/548/11/PDF/LBNL-54811.pdf

LBNL-54810. J. Li and L.-W. Wang (2004). First principle study of core/shell structure quantum dots. Applied Physics Letter 84(18), 3648. http://www-library.lbl.gov/docs/LBNL/548/10/PDF/LBNL-54810.pdf

LBNL-54766. J. B. Bell, M. S. Day, J. F. Grcar, and M. J. Lijewski (2004). Active control for turbulent premixed flame simulations. In Western States Section of the Combustion Institute 2004 Spring Meeting, Davis, CA. http://www-library.lbl.gov/docs/LBNL/547/66/PDF/LBNL-54766.pdf

LBNL-54762. A. Levan, P. Nugent, A. Fruchter, I. Burud, D. Branch, J. Rhoads, A. Castro-Tirado, J. Gorosabel, J. M. C. Ceron, S. E. Thorsett, C. Kouveliotou, S. Golenetskii, J. Fynbo, P. Garnavich, S. Holland, J. Hjorth, P. Moller, E. Pian, N. Tanvir, M. Ulanov, R. Wijers, and S. Woosley (2004). GRB 020410: A Gamma-ray burst afterglow discovered by its supernova light. The Astrophysical Journal 624(2pt1), 880-888. http://www-library.lbl.gov/docs/LBNL/547/62/PDF/LBNL-54762.pdf

LBNL-54728. Q. Yang and B. Parvin (2004). Perceptual Organization of Radial Symmetries. In Computer Vision and Pattern Recognition, IEEE, Baltimore, MD.

LBNL-54723. V. Brady, P. Concus, and R. Finn (2004). Computational investigation of unusual behavior in certain capillary tubes. Microgravity Science and Technology XV(4), 31-38. http://www-library.lbl.gov/docs/LBNL/547/23/PDF/LBNL-54723.pdf

LBNL-54673. K. Wu, E. Otoo, and A. Shoshani (2004). On the performance of bitmap indices for high cardinality attributes. In VLDB 2004: 30th International Conference on Very Large Data Bases, Toronto, Canada. http://www-library.lbl.gov/docs/LBNL/546/73/PDF/LBNL-54673.pdf

LBNL-54576 Ext. Abs. J. Shalf and T. Goodale (2004). GridRun: A lightweight packaging and execution environment for compact, multi-architecture binaries. In Thirteenth IEEE International Symposium on High-Performance Distributed Computing, Honolulu, HI. http://www-library.lbl.gov/docs/LBNL/545/76/PDF/LBNL-54576_Ext._Abs.pdf

LBNL-54497. L. Grigori and X. S. Li (2004). Performance analysis of parallel supernodal sparse LU factorization. In PARA'04 Workshop on State-of-the-Art in Scientific Computing, LNCS, Lyngby, Copenhagen, Denmark. http://www-library.lbl.gov/docs/LBNL/544/97/PDF/LBNL-54497.pdf

LBNL-54465. R. Kupferman, G. A. Pavliotis, and A. M. Stuart (2004). Ito versus stratonovich white noise limits for systems with inertia and colored multiplicative noise. Physical Review E 70, 1-9.

LBNL-54463. D. Givon, R. Kupferman, and A. Stuart (2004). Extracting macroscopic dynamics: Model problems and algorithms. Nonlinearity 17, R55-R127.

LBNL-54462. R. Kupferman and A. M. Stuart (2004). Fitting SDE models to nonlinear Kac-Zwanzig heat bath models. Physica D 199, 279-316.

LBNL-54351. J. B. Bell (2004). AMR for low Mach number reacting flow. In Chicago Workshop on Adaptive Mesh Refinement Methods, Springer Verlag, Chicago, Illinois. http://www-library.lbl.gov/docs/LBNL/543/51/PDF/LBNL-54351.pdf

LBNL-54300. J. B. Bell, M. S. Day, C. A. Rendleman, S. E. Woosley, and M. Zingale (2004). Direct numerical simulations of type Ia supernovae flames II: The rayleigh-taylor instability. Astrophysical Journal 608(pt.1), 883-906. http://www-library.lbl.gov/docs/LBNL/543/00/PDF/LBNL-54300.pdf

LBNL-54138. P. McCorquodale, P. Colella, D. P. Grote, and J.-L. Vay (2004). A node-centered local refinement algorithm for poisson's equation in complex geometries. Journal of Computational Physics 201(1), 34-60. http://www-library.lbl.gov/docs/LBNL/541/38/PDF/LBNL-54138.pdf

LBNL-54136. N. Shah, O. Couronne, L. A. Pennacchio, M. Brudno, S. Batzoglou, E. W. Bethel, E. M. Rubin, B. Hamann, and I. Dubchak (2004). Phylo-VISTA: An Interactive Visualization Tool for Multiple DNA Sequence Alignments. http://www-library.lbl.gov/docs/LBNL/541/36/PDF/LBNL-54136.pdf

LBNL-53920. G. Jin (2004). Packet Drop Avoidance for High-speed network transmission protocol. In International Conference on Information Technology: Research and Education, London, England. http://www-library.lbl.gov/docs/LBNL/539/20/PDF/LBNL-53920.pdf

LBNL-53731. S. Crivelli, O. Kreylos, N. Max, B. Hamann, and W. Bethel (2004). ProteinShop: A tool for interactive protein manipulation and steering. Journal of Computer-Aided Molecular Design 18(4), 271-85. http://www-library.lbl.gov/docs/LBNL/537/31/PDF/LBNL-53731.pdf

LBNL-53515. M. F. Wehner (2004). Predicted 21st century changes in seasonal extreme precipitation events in the parallel climate model. Journal of Climate 17(21), 4281-90. http://www-library.lbl.gov/docs/LBNL/535/15/PDF/LBNL-53515.pdf

LBNL-53509. J. Li and L.-W. Wang (2004). First principle calculations of ZnS:Te energy levels. Physical Review B 67, 205319(1-11).

LBNL-53508. L.-W. Wang, M. Califano, A. Zunger, and A. Fraceschetti (2004). Pseudopotential theory of Auger processes in CdSe quantum dots. Physical Review Letter 9105(5), 6404. http://www-library.lbl.gov/docs/LBNL/535/08/PDF/LBNL-53508.pdf

LBNL-52136. D. Givon, O. H. Hald, and R. Kupferman (2004). Existence proof for orthogonal dynamics and the Mori-Zwanzig formalism. Israel Journal of Mathematics 145, 221-241.

LBNL-49626. K. Wu, E. J. Otoo, and A. Shoshani (2004). An efficient compression scheme for bitmap indices. http://www-library.lbl.gov/docs/LBNL/496/26/PDF/LBNL-49626.pdf

LBNL-49326 Journal. J. B. Bell, M. S. Day, J. F. Grcar, and M. J. Lijewski (2004). Stochastic algorithms for the analysis of numerical flame simulations. Journal of Computational Physics 202(1), 262-80. http://www-library.lbl.gov/docs/LBNL/493/26/PDF/LBNL-49326_Journal.pdf

LBID-2511. E. Strohmaier and H. Shan (2004). Architecture independent performance characterization and benchmarking for scientific applications.

LBNL/PUB-5510. E. W. Bethel (2004). Infrastructure for Scalable and Interoperable Visualization and Analysis Software Technology. http://www-library.lbl.gov/docs/PUB/5510/PDF/PUB-5510.pdf

LBNL/PUB-912. E. W. Bethel, J. Shalf, and C. Siegerist (2004). Remote and distributed high performance scientific visualization - Terabytes to insights. http://www-library.lbl.gov/docs/PUB/912/PDF/PUB-912.pdf

LBNL/PUB-896 (Jan. 2004). J. M. Bashor (2004). CRD report, January 2004. http://www-library.lbl.gov/docs/PUB/896/PDF/PUB-896_(Jan._2004).pdf

LBNL/PUB-894. J. Shalf, E. W. Bethel, and C. Siegerist (2004). Personal Display Wall. http://www-library.lbl.gov/docs/PUB/894/PDF/PUB-894.pdf

LBNL/PUB-893. C. Siegerist, J. Shalf, and E. W. Bethel (2004). VisPortal: Increasing Scientific Productivity by Simplifying Access to and Use of Remote Computational Resources. http://www-library.lbl.gov/docs/PUB/893/PDF/PUB-893.pdf

LBNL/PUB-892. C. Siegerist, J. Shalf, E. W. Bethel, and C. Siegerist (2004). Interactive Remote and Distributed Visualization of Fusion Simulation Results. http://www-library.lbl.gov/docs/PUB/892/PDF/PUB-892.pdf


2003

LBNL-55881. Crockett, R. K., P. Colella, R. T. Fisher, R. I. Klein and C. F. McKee (2003). An unsplit, cell-centered godunov method for ideal MHD. Journal of Computational Physics.

LBNL-55563. Wu, K., W.-M. Zhang, A. Sim, J. Gu and A. Shoshani (2003). Grid collector: An event catalog with automated file management. IEEE Nuclear Science Syposium 2003, Portland OR, IEEE. http://www-library.lbl.gov/docs/LBNL/555/63/PDF/LBNL-55563.pdf | http://www-library.lbl.gov/docs/LBNL/555/63/PS/LBNL-55563.ps

LBNL-54907. Oliker, L., G. Gorden, P. Husbands and J. Chame (2003). Evaluation of architectural paradigms for addressing the processor-memory gap. http://www-library.lbl.gov/docs/LBNL/549/07/PDF/LBNL-54907.pdf

LBNL-54903. Griem, G. and L. Oliker (2003). Transitive closure on the imagine stream processor. Fifth Workshop on Media and Stream Processors (MSP5), San Diego, CA. http://www-library.lbl.gov/docs/LBNL/549/03/PDF/LBNL-54903.pdf

LBNL-54198. Bell, J. B., M. S. Day, I. G. Shepherd, M. Johnson, R. K. Cheng, V. E. Beckner, M. J. Lijewski and J. F. Grcar (2003). Numerical simulation of a laboratory-scale turbulent V-flame. Proceedings of the Combustion Institute.

LBNL-54187. Grcar, J. F., P. Glarborg, J. B. Bell, M. S. Day, A. Loren and A. D. Jensen (2003). Effects of mixing on ammonia oxidation in combustion environments at intermediate temperatures. Proceedings of the Combustion Institute. http://www-library.lbl.gov/docs/LBNL/541/87/PDF/LBNL-54187.pdf

LBNL-54161. Meza, J. C., R. A. Oliva, P. D. Hough and P. J. Williams (2003). OPT++: An object-oriented toolkit for nonlinear optimization. ACM Transactions on Mathematical Software.

LBNL-54135. Shah, N., O. Couronne, L. A. Pennacchio, M. Brudno, S. Batzoglou, E. W. Bethel, E. M. Rubin, B. Hamann and Dubchak.I. (2003). Phylo-vista: Interactive visualization of DNA multiple alignments. Bioinformatics 20(5).

LBNL-54107. Allen, G., K. Davis, K. N. Dolkas, N. D. Doulamis, T. Goodale, T. Kielmann, A. Merzky, J. Nabrzyski, J. Pukacki, T. Radke, M. Russell, E. Seidel, J. Shalf and I. Taylor (2003). Enabling applications on the Grid - A Gridlab overview. International Journal on High Performance Computing Applications 17(4).

LBNL-54088. Bell, J. B., M. S. Day, C. A. Rendleman, S. E. Woosley and M. Zingale (2003). Direct numerical simulations of type Ia supernovae flames I: The landau-darrieus instability. Astrophysical Journal.

LBNL-54031 Abs. Shalf, J., M. J. Bennett and G. Bell (2003). Transport requirements for high performance network applications that are NOT FTP. Second International Workshop on Protocols for Fast Long-Distance Networks, Chicago, Illinois. http://www-library.lbl.gov/docs/LBNL/540/31/PDF/LBNL-54031_Abs.pdf

LBNL-54010. Iancu, C., P. Husbands and W. Chen (2003). Message strip mining heuristics for high speed networks. http://www-library.lbl.gov/docs/LBNL/540/10/PDF/LBNL-54010.pdf | http://www-library.lbl.gov/docs/LBNL/540/10/PS/LBNL-54010.ps

LBNL-53989. Pinar, A. (2003). High-performance combinatorial algorithms. http://www-library.lbl.gov/docs/LBNL/539/89/PDF/LBNL-53989.pdf | http://www-library.lbl.gov/docs/LBNL/539/89/SRC/LBNL-53989.doc

LBNL-53988 Abs. Pinar, A., M. Singh and E. Ng (2003). Nested dissection orderings for LU factorization with static pivoting. SIAM Workshop on Combinatorial Scientific Computing, San Francisco. http://www-library.lbl.gov/docs/LBNL/539/88/PDF/LBNL-53988_Abs.pdf

LBNL-53986. Day, M. S., J. B. Bell, M. J. Lijewski, M. Johnson, R. K. Cheng and I. G. Shepherd (2003). Adaptive low mach number simulations of a premixed turbulent laboratory burner. The Fall 2003 Meeting of the Western States Section/The Combustion Institute, UCLA Campus (UCLA Faculty Center). http://www-library.lbl.gov/docs/LBNL/539/86/PDF/LBNL-53986.pdf

LBNL-53919 Abs. Jin, G. (2003). Available bandwidth measurement and sampling. ISMA 2003 Bandwidth Estimation Workshop BEst, SDSC Auditorium.

LBNL-53854. Amestoy, P. R., X. S. Li and E. G. Eg (2003). Diagonal Markowitz scheme with local symmetrization. SIAM J. Matrix Anal. Appl.

LBNL-53849. Kang, N. and L. A. Drummond (2003). A first prototype of PyACTS. http://www-library.lbl.gov/docs/LBNL/538/49/PDF/LBNL-53849.pdf

LBNL-53848. Li, X. S. (2003). An overview of SuperLU: Algorithms, implementation, and user interface. ACM Trans. on Math. Software (Special Issue on the DOE ACTS Collection).

LBNL-53838. Strohmaier, E. (2003). Top500 list's twice-yearly snapshots of world's fastest supercomputers develop into big picture of changing technology. Scientific Computing and Instrumentation 20(9).

LBNL-53808. Sankaran, S., J. M. Squyres, B. Barrett, A. Lumsdaine, J. Duell, P. Hargrove and E. Roman (2003). The LAM/MPI checkpoint/restart framework: System-initiated checkpointing. 2003 Los Alamos Computer Science Institute Symposium, El Dorado Hotel; Santa Fe, NM. http://www-library.lbl.gov/docs/LBNL/538/08/PDF/LBNL-53808.pdf

LBNL-53795. Miller, G. H. (2003). An iterative Riemann solver for systems of hyperbolic conservation law s, with application to hyperelastic solid mechanics. Journal of Computational Physics 193(1).

LBNL-53769. Perry, M. and D. Agarwal (2003). Collaborative editing within the pervasive collaborative computing environment. 5th International Workshop on Collaborative Editing, European Computer Support for Cooperative Work Conference 2003 (ECSCW2003), Helsinki, Finland. http://www-library.lbl.gov/docs/LBNL/537/69/PDF/LBNL-53769.pdf | http://www-library.lbl.gov/docs/LBNL/537/69/SRC/LBNL-53769.doc

LBNL-53758. Pinar, A. and B. Hendrickson (2003). Improving load balance with flexibly assignable tasks. IEEE Transactions on Parallel and Distributed Systems.

LBNL-53688. McCorquodale, P. (2003). AMRNodeElliptic user guide: On irregular problem domains. http://www-library.lbl.gov/docs/LBNL/536/88/PDF/LBNL-53688.pdf

LBNL-53687. McCorquodale, P. (2003). AMRNodeElliptic user guide: On rectangular problem domains. http://www-library.lbl.gov/docs/LBNL/536/87/PDF/LBNL-53687.pdf

LBNL-53686. McCorquodale, P. (2003). AMRNodeElliptic software package node-centered AMR for elliptic probl ems. http://www-library.lbl.gov/docs/LBNL/536/86/PDF/LBNL-53686.pdf

LBNL-53685. Meza, J. C. and R. A. Oliva (2003). An Object Oriented Library To Manage The Collection Of Schittkowki Test Problems For Nonlinear Optimization. ACM Richard Tapia Celebration of Diversity in Computing 2003, Atlanta, GA.

LBNL-53655. Day, M. S., J. B. Bell, A. S. Almgren, V. E. Beckner, M. J. Lijewski, R. Cheng, I. Shepherd and M. Johnson (2003). Numerical simulation of premixed turbulent methane combustion. Second M.I.T. Conference on Computational Fluid and Solid Mechanics, Albuquerque, NM, Elsevier Science. http://www-library.lbl.gov/docs/LBNL/536/55/PDF/LBNL-53655.pdf

LBNL-53653. Strohmaier, E. and H. W. Meuer (2003). Supercomputing: What have we learned from the TOP500 project? Algorithmy 2002, Conference on Scientific Computing, Vysoke Tatry, Podbanske.

LBNL-53624. Li, X. S. and Y. Wang (2003). Performance evaluation and enhancement of SuperLU_DIST 2.0. http://www-library.lbl.gov/docs/LBNL/536/24/PDF/LBNL-53624.pdf

LBNL-53570. Rescigno, T. N., M. Baertschy and C. W. McCurdy (2003). Resolution of phase ambiguities in electron-impact ionization amplitudes. Physical Review A 68(3).

LBNL-53521. Yang, W.-S. and C. Ding (2003). ZioLib: A parallel I/O library. http://www-library.lbl.gov/docs/LBNL/535/21/PDF/LBNL-53521.pdf | http://www-library.lbl.gov/docs/LBNL/535/21/PS/LBNL-53521.ps

LBNL-53368 Abs. Bethel, E. W. (2003). Interoperability of Visualization Software and Data Models is Not an Achievable Goal. IEEE Visaulization 2003, Seattle, WA. http://www-library.lbl.gov/docs/LBNL/533/68/PDF/LBNL-53368_Abs.pdf

LBNL-53355. Agarwal, D. A. and K. Berket (2003). Supporting Dynamic Ad hoc Collaboration Capabilities. 2003 Conference for Computing in High Energy and Nuclear Physics, La Jolla, CA. http://www-library.lbl.gov/docs/LBNL/533/55/PDF/LBNL-53355.pdf

LBNL-53215. Souza, E. d. and D. Agarwal (2003). A highspeed TCP Study: Characteristics and Deployment Issues. Not yet available, disneyland.

LBNL-53118. Shan, H., L. Oliker and R. Biswas (2003). Job superscheduler architecture and performance in computational grid environments. SC2003: High performance computing, networking, and storage conference, Phoenix, AZ.

LBNL-53117. Oliker, L., A. Canning, J. Carter, J. Shalf, D. Skinner, S. Ethier, R. Biswas, J. Djomehri and R. Van der Wijngaart (2003). Evaluation of cache-based superscalar and cacheless vector architectures for scientific computations. SC2003: High Performance Computing, Networking and Storage Conference, Phoenix, AZ. http://www-library.lbl.gov/docs/LBNL/531/17/PDF/LBNL-53117.pdf

LBNL-53116. Oliker, L., J. Duell, M. Narayanan and S. Chatterji (2003). Performance evaluation of two emerging media processors: VIRAM and imagine. Workshop on Parallel and Distributed Image Processing, Video Processing, and Multimedia (PDIVM), Nice, France. http://www-library.lbl.gov/docs/LBNL/531/16/PDF/LBNL-53116.pdf

LBNL-53115. Biswas, R., L. Oliker and H. Shan (2003). Parallel computing strategies for irregular algorithms. Annual review of scalable computing. Y. C. Kwong, Singapore University Press, World Scientific. 5. http://www-library.lbl.gov/docs/LBNL/531/15/PDF/LBNL-53115.pdf

LBNL-53099. Bresson, E., O. Chevassut and D. Pointcheval (2003). New Security Results on Encrypted Key Exchange. International Workshop on Practice and Theory in Public Key Cryptographyc (PKC), Singapore. http://www-library.lbl.gov/docs/LBNL/530/99/PDF/LBNL-53099.pdf | http://www-library.lbl.gov/docs/LBNL/530/99/PS/LBNL-53099.ps

LBNL-53023. Otoo, E. J. and A. Shoshani (2003). Accurate modeling of cache replacement policies in a Data-Grid. Twentieth IEEE/Eleventh NASA Goddard Conference on Mass Storage System & Technologies, San Diego, California, IEEE Computer Society. http://www-library.lbl.gov/docs/LBNL/530/23/PDF/LBNL-53023.pdf

LBNL-53022. Otoo, E. J., D. Rotem and A. Shoshani (2003). Impact of admission and cache replacement policies on response times of jobs on data grids. Challenges of Large Applications in Distributed Environments (CLADE'2003), Seattle, Washington, IEEE, Computer Society. http://www-library.lbl.gov/docs/LBNL/530/22/PDF/LBNL-53022.pdf

LBNL-53013. Lowekamp, B., B. Tierney, L. Cottrell, R. Hughes-Jones, T. Kielmann and M. Swany (2003). Enabling network measurement portability through a hierarchy of characteristics. Grid 2003, Phoenix, AZ. http://www-library.lbl.gov/docs/LBNL/530/13/PDF/LBNL-53013.pdf

LBNL-52998. Bethel, E. W., G. Humphreys, B. Paul and J. D. Brederson (2003). Sort-First, Distributed Memory Parallel Visualization and Rendering. 2003 Symposium on Parallel Visualization and Graphics, IEEE Visualization, Seattle, WA. http://www-library.lbl.gov/docs/LBNL/529/98/PDF/LBNL-52998.pdf

LBNL-52991. Gunter, D., B. L. Tierney, C. E. Tull and V. Virmani (2003). On-demand grid application tuning and debugging with the netlogger activation service. 4th International Workshop on Grid Computing (Grid2003), Phoenix, Arizona. http://www-library.lbl.gov/docs/LBNL/529/91/PDF/LBNL-52991.pdf

LBNL-52976. Thompson, M. R., A. Essiari, K. Keahey, V. Welch and B. Liu (2003). Fine-grained authorization for job and resource management using akenti and the globus toolkit. 2003 Conference for Computing in High Energy and Nuclear Physics (CHEP03), La Jolla, CA. http://www-library.lbl.gov/docs/LBNL/529/76/PDF/LBNL-52976.pdf

LBNL-52947. Peggs, S., T. Satogata, D. Agarwal and D. Rice (2003). Remote operations in a global accelerator network. Particle Accelerator Conference, Portland, OR. http://www-library.lbl.gov/docs/LBNL/529/47/PDF/LBNL-52947.pdf

LBNL-52940. Bethel, W., C. Siegerist, J. Shalf, P. Shetty, T. J. Jankun-Kelly, O. Kreylos and K.-L. Ma (2003). VisPortal: Deploying grid-enabled visualization tools through a web-portal interface. Workshop on Advanced Collaborative Environments (http://www-unix.mcs.anl.gov/fl/events/wace2003/), Seattle Washington, WACE. http://www-library.lbl.gov/docs/LBNL/529/40/PDF/LBNL-52940.pdf

LBNL-52895. Berket, K. and D. Agarwal (2003). Enabling secure Ad-hoc collaboration. Workshop on Advanced Collaborative Environments, Seattle, WA.

LBNL-52894. Agarwal, D., M. Lorch, M. Thompson and M. Perry (2003). A new security model for collaborative environments. Workshop on Advanced Collaborative Environments, Seattle, WA, ANL. http://www-library.lbl.gov/docs/LBNL/528/94/PDF/LBNL-52894.pdf

LBNL-52767. Jagadish, H. V. and F. Olken (2003). Database management for life sciences research: Workshop report National Library of Medicine, February 2-3, 2003.

LBNL-52549. Souza, E. d. (2003). A simulation-based study of HighSpeed TCP and its deployment. School of Electrical and Computer Engineering. Campinas/SP - Brazil, State University of Campinas. http://www-library.lbl.gov/docs/LBNL/525/49/PDF/LBNL-52549.pdf

LBNL-52542. Emmanuel, B., C. Olivier, E. Abdelilah and P. David (2003). Mutual authentication and group key agreement for low-power mobile devices. IEEE Conference on Mobile and Wireless Communication Networks, Singapore.

LBNL-52535. Wu, K., W. Koegler, J. Chen and A. Shoshani (2003). Using bitmap index for interactive exploration of large datasets. 15th International Conference on Scientific and Statistical Database Management, Cambridge, MA 02139. http://www-library.lbl.gov/docs/LBNL/525/35/PDF/LBNL-52535.pdf

LBNL-52496. Tierney, B. and J. Hollingsworth (2003). Instrumentation and Monitoring. The Grid 2: Blueprint for a New Computing Infrastructure. F. a. Kesselman, Elsevier. 2.

LBNL-52456. Butler, G. F., R. C. Lee and M. L. Welcome (2003). The global unified parallel file system (GUPFS) project: FY 2002 activities and results. http://www-library.lbl.gov/docs/LBNL/524/56/PDF/LBNL-52456.pdf

LBNL-52434. Grcar, J. F. (2003). Optimal sensitivity analysis of linear least squares. SIAM Review.

LBNL-52414. Kreylos, O., N. Max, B. Hamann, S. Crivelli and W. Bethel (2003). Interactive protein manipulation. Visualization 2003, Seattle, Washington.

LBNL-52395. Bell, J. B., M. S. Day, C. A. Rendleman, S. E. Woosley and M. A. Zingale (2003). Adaptive low Mach number simulations of nuclear flame microphysics. Journal of Computational Physics.

LBNL-52171. Bethel, W. and J. Shalf (2003). Consuming Network Bandwidth with Visapult. Visualization Handbook. C. J. a. C. Hansen, Academic Press. N/A. http://www-library.lbl.gov/docs/LBNL/521/71/PDF/LBNL-52171.pdf

LBNL-52168. Bell, J. B., M. S. Day, J. F. Grcar and M. J. Lijewski (2003). Analysis of carbon chemistry in numerical simulations of vortex flame interaction. 19th International Colloquium on the Dynamics of Explosions and Reactive Systems, Hakone, Kanagawa, Japan. http://www-library.lbl.gov/docs/LBNL/521/68/PDF/LBNL-52168.pdf

LBNL-52167. Bell, J. B., M. S. Day and A. Kuhl (2003). Numerical simulations of shock-induced mixing and combustion. 19th International Colloquium on the Dynamics of Explosions and Reactive Systems, Hakone, Kanagawa, Japan. http://www-library.lbl.gov/docs/LBNL/521/67/PDF/LBNL-52167.pdf

LBNL-52166. Bell, J. B., M. S. Day, J. F. Grcar, M. J. Lijewski, M. R. Johnson, R. K. Cheng and I. G. Shepherd (2003). Numerical simulation of a premixed turbulent V-flame. 19th International Colloquium on the Dynamics of Explosions and Reactive Systems, Hakone, Kanagawa, Japan, Institute of Dynamics of Explosions and Reactive Systems, Seattle, U.S. http://www-library.lbl.gov/docs/LBNL/521/66/PDF/LBNL-52166.pdf

LBNL-52164. Grcar, J. F., M. S. Day and J. B. Bell (2003). Conditional and opposed reaction path diagrams for the analysis of fluid-chemistry interactions. 19th International Colloquium on the Dynamics of Explosions and Reactive Systems, Hakone, Japan. http://www-library.lbl.gov/docs/LBNL/521/64/PDF/LBNL-52164.pdf

LBNL-52152. Yang, Q. and B. Parvin (2003). High resolution reconstruction of sparse data from dense low resolution spatio-temporal data. IEEE Transaction on Image Processing.

LBNL-52141. Thompson, M. R. and K. R. Jackson (2003). Security issues of grid management. Resource Management for Grid Computing. J. S. a. J. Nabrzyski, Kluwer Academic Press.

LBNL-52103. Bell, C., D. Bonachea, Y. Cote, J. Duell, P. Hargrove, P. Husbands, C. Iancu, M. Welcome and K. Yelick (2003). An evaluation of current high-performance networks. 17th International Parallel and Distributed Processing Symposium (IPDPS), 2003, Nice, France. http://www-library.lbl.gov/docs/LBNL/521/03/PDF/LBNL-52103.pdf

LBNL-51868. Bresson, E., O. Chevassut and D. Pointcheval (2003). Security Proofs for an efficient password-based key exchange. 10th ACM Conference on Computer and Communications Security (ACM CCS'03), Washington DC.

LBNL-51867. Fleischer, L. K., B. Hendrickson and A. Pinar (2003). A divide-and-conquer algorithm for identifying strongly connected components. Networks: An International Journal.

LBNL-51863. Pinar, A. and B. Hendrickson (2003). Interprocessor communication with limited memory. IEEE Transactions on Parallel and Distributed Systems.

LBNL-51849. Yang, Q. and B. Parvin (2003). Harmonic cut and regularized centroid transform for localization of subcellular structures. IEEE Transaction on Biomedical Engineering.

LBNL-51846. Agarwal, D., J. M. Gonzalez, B. Tierney and G. Jin (2003). An infrastructure for passive network monitoring of application data streams. 2003 Passive and Active Measurement Workshop, San Diego, CA. U.S.A. http://www-library.lbl.gov/docs/LBNL/518/46/PDF/LBNL-51846.pdf

LBNL-51776. Tierney, B. (2003). Using NetLogger and Web100 for TCP analysis. First International Workshop on Protocols for Fast Long-Distance Networks, Geneva, Switzerland. http://www-library.lbl.gov/docs/LBNL/517/76/PDF/LBNL-51776.pdf

LBNL-51743. Li, J. and L.-w. Wang (2003). High energy excitations in CdSe quantum rods. Nano letters 3(1).

LBNL-51616. Thompson, M. R., A. Essiari and S. Mudumbai (2003). Certificate-based authorization policy in a PKI environment. ACM Transactions on Information and System Security 6(4).

LBNL-51202. Parvin, B., Q. Yang, G. Fontenay and M. Barcellos-Hoff (2003). An image-based informatics system for phenotypic studies. IEEE Computers.

LBNL/PUB-895. Simon, H. D. (2003). Manipulating and Visualizing Proteins. http://www-library.lbl.gov/docs/PUB/895/PDF/PUB-895.pdf | http://www-library.lbl.gov/docs/PUB/895/SRC/PUB-895.doc

LBNL/PUB-886. Bethel, E. W., R. Frank, S. Fulcomer, C. Hansen, K. Joy, J. Kohl and D. Middleton (2003). Visual Data Exploration and Analysis: Report on the Visualization Breakout Session of the SCaLeS Workshop. http://www-library.lbl.gov/docs/PUB/886/PDF/PUB-886.pdf

LBNL/PUB-3176. Drummond, L. A., O. A. Marques and G. V. Wilson (2003). An infrastructure for the creation of high end scientific and enginee ring software tools and applications. http://www-library.lbl.gov/docs/PUB/3176/PDF/PUB-3176.pdf


2002

LBNL-54908. Oliker, L., P. Husbands, A. Janin and X. S. Li (2002). Scientific kernels on VIRAM and imagine media processors. http://www-library.lbl.gov/docs/LBNL/549/08/PDF/LBNL-54908.pdf

LBNL-53897. Drummond, L. A. and O. A. Marques (2002). Acts -- A collection of high performing software tools for scientific co mputing. Tenth ECMWF Workshop on the Use of HPC in Meteorology, European Centre for Medium-Range Weather Forecasts,Reading, England, World Scientific. http://www-library.lbl.gov/

LBNL-53253. Agarwal, D., G. Olson and J. Olson (2002). Collaboration tools for the global accelerator network: Workshop Report. http://www-library.lbl.gov/docs/LBNL/532/53/PDF/LBNL-53253.pdf

LBNL-53114. Shan, H., J. P. Singh, L. Oliker and R. Biswas (2002). Message passing and shared address space parallelism on an SMP cluster. Parallel Computing 29.

LBNL-53113. Oliker, L., X. Li, P. Husbands and R. Biswas (2002). Effects of ordering strategies and programming paradigms on sparse matrix computations. SIAM review 44(3).

LBNL-52590. Tierney, B., J. Lee, D. Gunter, M. Stoufer and T. Dunigan (2002). Improving distributed application performance using TCP instrumentation.

LBNL-52197. Olson, D. L. (2002). Summary of Parallel Session I: Grid testbeds and applications. VIII International Workshop on Advanced Computing and Analysis Techniques in Physics Research, Moscow, Russia. http://www-library.lbl.gov/docs/LBNL/521/97/PDF/LBNL-52197.pdf

LBNL-51022. Dunigan, T., M. Mathis and B. Tierney (2002). A TCP tuning daemon. IEEE Supercomputing, Baltimore, Maryland. http://www-library.lbl.gov/docs/LBNL/510/22/PDF/LBNL-51022.pdf

LBNL-50520. Grigori, L. and X. S. Li (2002). A new scheduling algorithm for parallel sparse LU factorization with static pivoting. SC2002, Baltimore. http://www-library.lbl.gov/docs/LBNL/505/20/PDF/LBNL-50520.pdf

LBNL-50216. Tierney, B., D. Gunter, J. Lee and M. Stoufer (2002). Monitoring data archives for grid environments. IEEE Supercomputing, Baltimore, Maryland. http://www-library.lbl.gov/docs/LBNL/502/16/PDF/LBNL-50216.pdf

LBNL-49698. Gunter, D., B. Tierney, J. Lee, M. Stoufer, K. Jackson and B. Crowley (2002). Dynamic monitoring of high-performance distributed applications. The 11th IEEE Symposium on High Performance Distributed Computing, Edinburgh, Scotland. http://www-library.lbl.gov/docs/LBNL/496/98/PDF/LBNL-49698.pdf

LBNL-49370. Jackson, K. R. (2002). pyGlobus: A python interface to the globus toolkit(TM). Concurrency and Computation: Practice and Experience 14(13-15).

LBNL/PUB-3175. Drummond, T. and O. Marques (2002). The ACTS collection robust and high-performance tools for scientific computing: Guidelines for tool inclusion and retirement. http://www-library.lbl.gov/docs/PUB/3175/PDF/PUB-3175.pdf

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